DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ubc84D and let-70

DIOPT Version :9

Sequence 1:NP_524260.1 Gene:Ubc84D / 40900 FlyBaseID:FBgn0017456 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_502065.1 Gene:let-70 / 178006 WormBaseID:WBGene00002344 Length:147 Species:Caenorhabditis elegans


Alignment Length:147 Identity:48/147 - (32%)
Similarity:84/147 - (57%) Gaps:3/147 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPP 66
            |.:|:.:||.||.....:........|: |..|...:: |.::||..|.|.:.|:||..|||.||
 Worm     2 ALKRIQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPP 65

  Fly    67 KILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVR 131
            |:.|.|:|||||::..|.:||.|:.: .|.|.....:||.::.:::.:|.|:.||..::|..:..
 Worm    66 KVAFTTRIYHPNINSNGSICLDILRS-QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT 129

  Fly   132 EHKKFMKTAEEFTKKNA 148
            :.:::.:.|.|:|:|.|
 Worm   130 DRERYNQLAREWTQKYA 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc84DNP_524260.1 COG5078 1..150 CDD:227410 48/147 (33%)
UBCc 6..149 CDD:214562 47/144 (33%)
let-70NP_502065.1 UBCc 1..146 CDD:412187 47/145 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.