DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and GLR1.3

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_199652.1 Gene:GLR1.3 / 834896 AraportID:AT5G48410 Length:860 Species:Arabidopsis thaliana


Alignment Length:770 Identity:141/770 - (18%)
Similarity:256/770 - (33%) Gaps:224/770 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KLQVKVISW--PL-IILTAFLRVLQIESINTNFLELAAFEDFLRSEHLSHVLVVRGDDADGDWKI 64
            |.:|.:||.  |. :.|:.:..::|....:|:  |......|:.....:.|.:|. :|.| ||: 
plant   128 KARVPMISLDSPFSLSLSKYTHLIQATHDSTS--EAKGITSFINVFDWNSVALVY-EDHD-DWR- 187

  Fly    65 ECHQKLLANYRVQFYRPEMSANF-----EDLMFYGSPR-----TAVLVLNSEHVLVRRQVFGVAS 119
            |..|.|:.::.....|.:....|     ||.:.....:     |.|.|::...| :...:|..|.
plant   188 ESMQLLVEHFHENGVRVQSKVGFTVSSSEDFVMGRLQQLKDLGTTVFVVHLSEV-IATHLFPCAR 251

  Fly   120 EAGYFNNSLAWFILGS---------------------------------------GRESLPVEQL 145
            ..|...:...|.:...                                       .|:|||||:.
plant   252 RLGLMGDGFVWILTAKTMNSFHENIDDFTKQAMEGVVGFKSYIPMSIELQNFTLRWRKSLPVEEA 316

  Fly   146 IDQLLSGYRMGIDA-DITVAL-------RGPDNASMLFYDVYRI-------SRQANTPLIIEKK- 194
              :|......||.| ||..||       |.|:..|.|..::.:.       ..|.|...::..| 
plant   317 --ELTRLSISGIWAHDIAFALARAAEVIRMPNVTSTLLEEITKTRFNGLSGDFQLNDKKLLSNKF 379

  Fly   195 ------GLWTHSGGY-QKFGNFKNTWVIRRRNFLNV-----TLIGSTVLTEKPPGFGDMEYLADD 247
                  |......|: ...|:|.|     ||:..:.     |:|......:.|.|...::  :|.
plant   380 EIINMIGSSERRVGFLNSNGSFSN-----RRHLSSTHNKLETIIWPGGSAQSPKGTSLID--SDR 437

  Fly   248 KQLQQL---------------DPMQRK------TYQLFQLVERMFNLSLAISLTDKWGELLDNGS 291
            |:|:.|               ||:..:      ..::|:.....||..:...   .|   |:..:
plant   438 KKLRVLVTSSNRFPRLMKVETDPVTNELIVEGFCIEVFRASISPFNYEVEYI---PW---LNGSN 496

  Fly   292 WSGVMGQVTSR--EADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNIFFEPLSN 354
            :..:...:.|:  :.|.||..|....:|..||.::.......:..:....|...   :||:||:.
plant   497 YDNLAYALHSQKDKYDAAVGDITITSNRSTYVDFTLPFTEMGLGIVAVKERSMW---VFFQPLTP 558

  Fly   355 QVW--------------WCV-----------------LALVTGSTILLLFHVRLERMLSNMENRF 388
            .:|              |.:                 :.|..|.:.|:..|  .|::..|:....
plant   559 DLWITSAFFFVLTGVIVWLIERAENKEFQGSWPQQIGVVLWFGFSTLVYAH--REKLKHNLSRFV 621

  Fly   389 SFVW-FTMLETYLQQGPANEIFRLFSTRLLISLSCI--FSFMLMQFYGAFIVGSLLSESARSIVN 450
            ..|| |.:|           |.....|..|.|:..:  ..|...:.|...:.|||::..|.:..:
plant   622 VTVWVFAVL-----------ILTASYTATLTSMMTVQQIRFNSNEDYVGHLSGSLIANVALTSSS 675

  Fly   451 LQALYDSNLAIGMENIS-YNFPIFTNTSNQLVRDV-YVKKICKSGEHNIMSLQQGAERIIQGRFA 513
            |:|:    .::|:.:.: |...:...|.:.:|.:: |:|                   ::.|...
plant   676 LRAM----RSLGLNSAADYAQALLNKTVSFVVDELPYLK-------------------VVLGENP 717

  Fly   514 FHTAIDRMYRLLLELQMDEAEFCDLQEVMFNLPYDSGSVMPKGSPWREHLAHALLHFRATGLLQY 578
            .|.       .:::.|.....|              |.:..||.....:::..:...|.:..|..
plant   718 THF-------FMVKTQSTTNGF--------------GFMFQKGFELVPNVSREISKLRTSEKLNE 761

  Fly   579 NDKKWMVRRPDCSLFKTSQAEVDLEHFAPALFALALAMVASALVFLLELFLH--W 631
            .:|:|...:...:...||. .:.|..|. .||.:.....|.||..|:.|.|.  |
plant   762 MEKRWFDNQLPYTTDDTSN-PITLYRFR-GLFIIIGVSFAFALAVLVILCLRDKW 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 15/67 (22%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 68/424 (16%)
Lig_chan 355..602 CDD:278489 43/282 (15%)
GLR1.3NP_199652.1 PBP1_GABAb_receptor 43..405 CDD:107361 57/289 (20%)
ANF_receptor 57..385 CDD:279440 52/264 (20%)
GluR_Plant 438..767 CDD:270404 63/394 (16%)
Lig_chan 559..798 CDD:278489 47/297 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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