DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and GLR2.1

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_198062.2 Gene:GLR2.1 / 832768 AraportID:AT5G27100 Length:901 Species:Arabidopsis thaliana


Alignment Length:803 Identity:143/803 - (17%)
Similarity:271/803 - (33%) Gaps:235/803 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KLQVKVISW----PLIILTAFLRVLQIESINTNFLELAAFEDFLRSEHLSHVLVVRG-------- 55
            |.||.::::    |           .:.||.:.:...|.::|..:...:..::.:.|        
plant   118 KSQVPIVTYSATSP-----------SLASIRSQYFFRATYDDSSQVHAIKEIIKLFGWREVAPVY 171

  Fly    56 -DDADGDWKIECHQKLLANYRVQF-YRPEMSANFED------LMFYGSPRTAVLVLNSEHVLVRR 112
             ||..|:..:.....:|....|:. ||..:|.|..|      |:...:..|.|.|::...:|..|
plant   172 VDDTFGEGIMPRLTDVLQEINVRIPYRTVISPNATDDEISVELLRMMTLPTRVFVVHLVELLASR 236

  Fly   113 QVFGVASEAGYFNNSLAWFILGSGRESLPV--EQLIDQL---------------LSGYR------ 154
             .|..|:|.|.......|.:..:..:.|.:  |..|:.:               |..:|      
plant   237 -FFAKATEIGLMKQGYVWILTNTITDVLSIMNETEIETMQGVLGVKTYVPRSKELENFRSRWTKR 300

  Fly   155 --------MGIDA-DITVAL------RGPDNASMLFYDVYR--------------------ISR- 183
                    .|:.| |.|.||      .|..|.:.:..|..|                    :|| 
plant   301 FPISDLNVYGLWAYDATTALALAIEEAGTSNLTFVKMDAKRNVSELQGLGVSQYGPKLLQTLSRV 365

  Fly   184 ----------------QANTPLIIEKKGLWTHSGGY--QKFGNFKN------------TWVIRRR 218
                            |.:...|:...|....:.|:  :::|.|||            :|..|.|
plant   366 RFQGLAGDFQFINGELQPSVFEIVNVNGQGGRTIGFWMKEYGLFKNVDQKPASKTTFSSWQDRLR 430

  Fly   219 NFLNVTLIGSTVLTEKPPGFGDMEYLADDKQLQQLDPMQRKTYQLFQLVER--MFNLSLAISLTD 281
               .:...|.|  |..|.|:   |...:.|:||...|: ..|:|.|....|  :.|.::....:.
plant   431 ---PIIWPGDT--TSVPKGW---EIPTNGKRLQIGVPV-NNTFQQFVKATRDPITNSTIFSGFSI 486

  Fly   282 KWGELL---------------DNGSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQN 331
            .:.|.:               .:|.:..::.||...:.|..|.......:|..||.:|.......
plant   487 DYFEAVIQAIPYDISYDFIPFQDGGYDALVYQVYLGKYDAVVADTTISSNRSMYVDFSLPYTPSG 551

  Fly   332 IHFLFRHPRRSHIK---NIFFEPLSNQVWWCVLALVTGSTILLLFHVRLERMLSNMENRFSF--- 390
            :..:.  |.:..::   .||..||:..:|  :::|::...|.|:..|...|:..:.:....:   
plant   552 VGLVV--PVKDSVRRSSTIFLMPLTLALW--LISLLSFFIIGLVVWVLEHRVNPDFDGPGQYQLS 612

  Fly   391 --VWFTMLETYLQQGPANEIFRLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSESAR-SIVNLQ 452
              .||:.  :.:...|...:.. |..|:::.:......:|.|.|.|.:...|.::... ::.|:.
plant   613 TIFWFSF--SIMVFAPRERVLS-FWARVVVIIWYFLVLVLTQSYTASLASLLTTQHLHPTVTNIN 674

  Fly   453 ALYDSNLAIGMEN-----------------ISYNFPIFTNTSNQLVRDVYVKKICKSGEHNIMSL 500
            :|.....::|.::                 :||..|                      ||....|
plant   675 SLLAKGESVGYQSSFILGRLRDSGFSEASLVSYGSP----------------------EHCDALL 717

  Fly   501 QQG-AERIIQGRFAFHTAIDRMYRLLLE---LQMDEAEFCDLQEVMFNLPY---DSGSVMPKGSP 558
            .:| ||..:..             :|:|   :::...::|:..: |...|:   ..|.|.|.|||
plant   718 SKGQAEGGVSA-------------VLMEVPYVRIFLGQYCNKYK-MVQTPFKVDGLGFVFPIGSP 768

  Fly   559 WREHLAHALLHFRATGLLQYNDKKWM----------VRRPDCSLFKTSQAEVDLEHFAPALFALA 613
            ....::.|:|....:......:..|.          :..||.:. ..|..::..:.|. .||.:|
plant   769 LVADISRAILKVEESNKANQLENAWFKPIDESCPDPLTNPDPNP-SVSFRQLGFDSFW-VLFLVA 831

  Fly   614 LAMVASALVFLLELFLHWLPDFR 636
            ..:...||:..:..||...|:.|
plant   832 AIVCTMALLKFVYQFLKENPNQR 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 16/73 (22%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 71/410 (17%)
Lig_chan 355..602 CDD:278489 45/286 (16%)
GLR2.1NP_198062.2 PBP1_GABAb_receptor 49..411 CDD:107361 53/304 (17%)
ANF_receptor 49..392 CDD:279440 49/285 (17%)
GluR_Plant 452..794 CDD:270404 65/385 (17%)
Periplasmic_Binding_Protein_Type_2 478..>685 CDD:304360 33/213 (15%)
Lig_chan 576..835 CDD:278489 49/301 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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