DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and GLR2.4

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001328410.1 Gene:GLR2.4 / 829299 AraportID:AT4G31710 Length:912 Species:Arabidopsis thaliana


Alignment Length:801 Identity:151/801 - (18%)
Similarity:259/801 - (32%) Gaps:261/801 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KLQVKVISWPLIILTAFLRVLQIESINTNFLELAAFEDFLRSEHLSHVLVVRG---------DDA 58
            |.||.:||:.  ..:.||     :|..:.:...:.::|..:.:.:|.::.|.|         ::|
plant   141 KSQVPIISFS--ATSPFL-----DSGRSPYFFRSTYDDSSQVQAISEIIKVFGWREVVPVYENNA 198

  Fly    59 DGDWKI----ECHQKLLANYRVQFYRPEMSANFE------DLMFYGSPRTAVLVLNSEHVLVRRQ 113
            .|:..:    :..|.:  |.|:. ||..:|.|..      ||:...:..|.|.|::....|..| 
plant   199 FGEGIMPGLTDALQAI--NIRIP-YRTVISPNATDDEISVDLLKLMTKPTRVFVVHMNRFLASR- 259

  Fly   114 VFGVASEAGYFNNSLAWFILGSG----------------------RESLPVEQLI----DQLLSG 152
            ||..|.|.|......|| ||.:|                      |...|:.:.:    .:|...
plant   260 VFSKARETGLMKQGYAW-ILTNGVIDHLVLMNGTDIEAMQGVIGIRTHFPISEELQTFRSRLAKA 323

  Fly   153 YRM------GIDA-DITVAL------RGPDNASMLFYDVYRIS-------RQANTPLI-----IE 192
            :.:      |:.| |.|.||      .|..|.:....|...||       .:....||     |:
plant   324 FPVSELNIYGLRAYDATTALAMAVEEAGTTNLTFSKMDGRNISDLEALSVSEYGPKLIRSLSQIQ 388

  Fly   193 KKGL-------------------------------WTHSGGYQK-----FGNFK--NTWVIRRRN 219
            .|||                               ||...|..|     .|..:  ::|    :|
plant   389 FKGLSGDYHFVDGQLHASVFEIVNVIDGGGILVGFWTQDKGLVKDLSPSSGTTRTFSSW----KN 449

  Fly   220 FLNVTLIGSTVLTEKPPGFGDMEYLADDKQLQ--------------QLDPMQRKTYQLFQLVERM 270
            .||..|.....|| .|.|:   |...:.|:||              ..||:..:|......:: .
plant   450 HLNPILWPGITLT-VPKGW---EIPTNGKELQIGVPVGTFPQFVKVTTDPLTHETIVTGFCID-F 509

  Fly   271 FNLSLAISLTDKWGELLDNGSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFL 335
            |...:.....|.....:..|...|.....|            .:.:|..||.::....|..:..:
plant   510 FEAVIQAMPYDVSHRFIPFGDDDGKTNDTT------------ILANRSSYVDFTLPYTTSGVGMV 562

  Fly   336 FRHPRRSHIKN---IFFEPLSNQVWWCVLA--LVTGSTILLLFHVRLERMLSNMENRF------- 388
            .  |.:.::..   |||:||:..:|...|.  .|.|..:.:|.|        .:.:.|       
plant   563 V--PLKDNVARSSLIFFKPLTPGLWGMTLGSFFVVGFVVWILEH--------RVNSEFTGPPQYQ 617

  Fly   389 --SFVWFTMLETYLQQGPANEIFRLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSESARSIVNL 451
              :..||..  :.:...|...:.. |:.|:::........:|.|.|.|         |..|::..
plant   618 ISTMFWFAF--SIMVFAPRERVMS-FTARVVVITWYFIVLVLTQSYTA---------SLSSLLTT 670

  Fly   452 QALYDSNLAIGMENISYNFPIFTNTSNQLV--------RDVYV-KKICKSGEHNIMSLQQGAERI 507
            |.|.               |..|:..|.|.        ||.:| .|:.:||             .
plant   671 QQLN---------------PTETSIKNVLAKGGPVAYQRDSFVLGKLRESG-------------F 707

  Fly   508 IQGRFAFHTAIDRMYRLLLE----------------LQMDEAEFCDLQEVMFNLPYD---SGSVM 553
            .:.|....|:.::...||.:                :::...::|...: |..:|:|   .|.|.
plant   708 PESRLVPFTSPEKCEELLNKGPSKGGVSAAFMEVPYVRVFLGQYCKKYK-MVEVPFDVDGFGFVF 771

  Fly   554 PKGSPWREHLAHALLHFRATGLLQYNDKKWM----------VRRPDCS---LFKTSQAEVDLEHF 605
            |.|||....::.|:|....:......:..|.          :..||.:   .|:....:..|..|
plant   772 PIGSPLVADVSRAILKVAESNKATQLETAWFKNIDKTCPDPMNNPDPNPTVSFRKLSLDSFLLLF 836

  Fly   606 APALFALALAMVASALVFLLE 626
            ..|.....||::...:.||::
plant   837 VAAATVCTLALLKFVICFLIQ 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 16/76 (21%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 74/416 (18%)
Lig_chan 355..602 CDD:278489 50/298 (17%)
GLR2.4NP_001328410.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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