DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and grik1a

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_009303592.1 Gene:grik1a / 798001 ZFINID:ZDB-GENE-030131-6502 Length:919 Species:Danio rerio


Alignment Length:513 Identity:120/513 - (23%)
Similarity:204/513 - (39%) Gaps:79/513 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 GYRMGIDADITVALRGPDNASMLFYDVYRISRQANTPLIIEKKGLWTHSGGYQKFGNFKNTWVIR 216
            |.|...:.|: ::|:....|.       |::..|:.|     ..|||..|.:..:.....|.:..
Zfish   385 GLRKEFNLDL-ISLKEDGTAK-------RVADGASRP-----NKLWTKIGVWNSYTGLNLTEIKD 436

  Fly   217 RRN----FLNVTLIGSTVLTEKPPGFGDMEYLADDKQLQQLDPMQRKTYQLFQLVERMFNLSLAI 277
            .:|    ..|.|||.:|:| |.|    .:.|...||.|...|..:.....|.:.:..:...:..:
Zfish   437 NKNITDSLANRTLIVTTIL-ENP----YVMYKKSDKVLYGNDRFEGYCLDLLKELSNILGFTYEV 496

  Fly   278 SL-TD-KWGELLDNGSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPR 340
            .| || |:|...|.|.|:|::.::....||.||.|:.....|:..:.:|....|..|..|:|.|.
Zfish   497 KLVTDGKYGAQNDKGEWNGMVRELIDHIADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPN 561

  Fly   341 RSHIKNI-FFEPLSNQVWWCVLALVTGSTILLLFHVRL-----------ERMLSNMENRFSF--- 390
            .::.... |..||:..:|..||....|.:.:|....|.           ......:||.|:.   
Zfish   562 GTNPGVFSFLNPLTPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPSSEVVENNFTLLNS 626

  Fly   391 VWFTMLETYLQQGPANEIF-RLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSESARSIVNLQAL 454
            :||. :...::||  :|:. :..|||:|..:...|:.:::..|.|.:...|..|...|.:     
Zfish   627 LWFG-VAALMRQG--SELMPKALSTRILGGIWWFFTLIIISSYTANLAAFLTVERMDSPI----- 683

  Fly   455 YDS--NLAIGMENISYNFPIFTNTSNQLVRD----VYVKKICKSGEHNI---MSLQQGAERIIQG 510
             ||  :|| ....|.|.          .|||    .:.||...|....:   ||.::....:...
Zfish   684 -DSADDLA-KQTRIEYG----------AVRDGSTMTFFKKSKISTYEKMWAFMSSRKNTALVKNS 736

  Fly   511 RFAFHTAIDRMYRLLLE---LQMDEAEFCDLQEV---MFNLPYDSGSVMPKGSPWREHLAHALLH 569
            :......:...|.||:|   ::......|:|.:|   :.:..|..|:  |.|||:|:.:..|:|.
Zfish   737 KDGITRVLTTDYALLMESTSIEYITQRNCNLTQVGGLIDSKGYGVGT--PIGSPYRDKVTIAILQ 799

  Fly   570 FRATGLLQYNDKKWMVRRPDCSLFKTSQAE-VDLEHFAPALFALALAMVASALVFLLE 626
            .:..|.|....:||. |...|....:.:|. :.:|:.......||..:|.|..|.:.|
Zfish   800 LQEEGKLHMMKEKWW-RGNGCPEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGE 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 94/393 (24%)
Lig_chan 355..602 CDD:278489 61/277 (22%)
grik1aXP_009303592.1 Periplasmic_Binding_Protein_Type_1 37..432 CDD:299141 12/59 (20%)
ANF_receptor 57..398 CDD:279440 3/13 (23%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:304360 96/396 (24%)
Lig_chan 577..846 CDD:278489 64/291 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591530
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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