DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and grin3ba

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:658 Identity:133/658 - (20%)
Similarity:235/658 - (35%) Gaps:164/658 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 ANYRVQFYRPEMSANFEDLMFYGSPRTAVLVLNSEHVLVRRQVFGVASEAGYFNNSLAWFILGSG 136
            |.|.....||:::.....:..:..|....|..:.:::            |.:.:|:....:.|..
Zfish   326 AVYAATMVRPDLALIQNMVNCFDKPNKHELPSSGQYL------------ARFLSNTSFTGLTGPV 378

  Fly   137 RESLPVEQLIDQLLSGYR----------MGIDADITVALRGPDNASMLFYDVYRISRQANTPLII 191
            |    ||:...::|:..|          :|..:.:|||                 |.|:.. |.:
Zfish   379 R----VERSFSRVLTSQRFHIWSLQRDPLGQPSWVTVA-----------------SWQSGR-LEL 421

  Fly   192 EKKGLW--------THSGGYQKFGNFKNTWVIRRRNFLNVTLIGSTVLTEKPPGFG---DMEYLA 245
            |::|||        ....|.:..|.::....:.......|||:      |.|..|.   |.|...
Zfish   422 EEQGLWPGVTQHQREDGPGIRLGGRWQAGLPVAGSRLRVVTLV------EHPFVFTREVDEEGQC 480

  Fly   246 DDKQLQQLDPMQRKT---YQLFQLVERMFNLSL-----------AISLTDKWGELL--------- 287
            ...|| .|||....:   .|||:.:|:..:.||           .|.|.:|..|.:         
Zfish   481 PAGQL-CLDPQTNNSEVLNQLFRELEQTNSSSLPTDMRKCCYGYCIDLLEKLAEDMHFEFDLYIV 544

  Fly   288 --------DNGSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHI 344
                    ..|.|||::|.:.|..||.||........|...:.:::...:.::..|.|....:..
Zfish   545 GDGKYGAWKGGRWSGLVGDLLSGVADMAVTSFSINSARSRVIDFTSPFFSTSLGILVRSKDTAAP 609

  Fly   345 KNIFFEPLSNQVWWCVLALVTGSTILLLFHVRLE-----RMLSNMENR---FSF-----VWFTML 396
            ...|..||...:|   :.:.....|..||....|     .|..:..||   ||:     :.:.:|
Zfish   610 IGAFMWPLHWSMW---VGIFVALHITALFITLYEWNSPFGMTPHGRNRIRVFSYSSALNLCYAIL 671

  Fly   397 --ETYLQQGPANEIFRLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSESARSIVNLQALYDSNL 459
              .|...:.|     :.::.|.|::|..||..:::..|.|.:...::.|  ::...:..::|  :
Zfish   672 FGRTVASKTP-----KCWTGRFLMNLWAIFCLLVLSSYTANLAAVMVGE--KTFEEVSGIHD--V 727

  Fly   460 AIGMENISYNFPIFTNTSNQLVRDVYVKKICKSGEHNIMSLQQGAERIIQGRFAFHTAIDR---- 520
            .:...::.:.|    .|..:...:.||||.... .|..|.           ||...|..|.    
Zfish   728 KLHHPSLGFRF----GTVRESSAEDYVKKSFPE-MHEYMR-----------RFNKPTTPDGVSTL 776

  Fly   521 -----------MYRLLLELQMDEAEFCDLQEVMFNLPY---DSGSVMPKGSPWREHLAHALLHFR 571
                       |.:.||:.::.....|.|..|  ..|:   ..|..:|:.||...:::..:..::
Zfish   777 KTDPPQLDAFIMDKALLDYEVSIDADCKLLTV--GKPFAIEGYGIGLPQNSPLTRNVSEYVSRYK 839

  Fly   572 ATGLLQYNDKKWMVRRPDCS--LFK-TSQAEVDLEHFAPALFALALAMVASALVFLL---ELFLH 630
            :.|.:.....||....| |.  :|. |...::.::||: .||.|....||.||:.||   ..|..
Zfish   840 SDGYMDMLHDKWYKVVP-CGKRVFAVTETLQMGIQHFS-GLFVLLCVGVAGALLTLLGEHAFFRF 902

  Fly   631 WLPDFRRR 638
            .||..|.:
Zfish   903 ILPHLRHQ 910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 6/39 (15%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 85/427 (20%)
Lig_chan 355..602 CDD:278489 52/282 (18%)
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556 24/135 (18%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 86/431 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591552
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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