DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and grid2

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:584 Identity:126/584 - (21%)
Similarity:237/584 - (40%) Gaps:92/584 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 TAVLVLNSEH-VLVRRQVFGVASEAGYFNNSLAWFILGSGRESLPVEQLIDQLLSGYRMGIDADI 161
            |.:|:.|:.| .|..|:...:||.:.....|..|    .|.:|         :|...:.|..:.:
Zfish   330 TVLLLANTFHRKLEDRKWHSMASLSCIRKGSKPW----QGGKS---------MLETVKKGGVSGL 381

  Fly   162 TVALRGPDNAS--MLFYDVYRISRQANTPLIIEKKGLWTHSGGYQKFGNFKNTWVIRR--RNFLN 222
            |..|...||.|  .:.:::...:...:....:.:...|....|      ...|...|:  .|...
Zfish   382 TSLLEFNDNGSNPNIHFEILGTNYGEDRGRGVSRLATWDPIHG------LNGTLTDRKLENNMRG 440

  Fly   223 VTLIGSTVLTEKPPGFGDMEYLADDKQLQ--QLDPMQRKTYQLFQLVERMFNLSLAISLTDKWGE 285
            |.|...||| |:|........|...|:.|  .:|.:......|      .|...:.::...|:|.
Zfish   441 VVLRVVTVL-EEPFVMVSENVLGKPKKYQGFSIDVLDALANYL------GFKYEIYVAPDHKYGS 498

  Fly   286 LLDNGSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNIFFE 350
            ...:|:|:|::|::..:.||..:..:....:|:..|.::......::..|.|...|:........
Zfish   499 QQADGTWNGLIGELVFKRADVGLSALTITPERESVVDFTTRYMDYSVGVLLRKAERTVDMFACLA 563

  Fly   351 PLSNQVWWCV--LALVTGSTILLLFHVRLERM-LSNMENR--FSFVWFTMLETYLQQGPANEI-F 409
            |....:|.|:  ..|:.|:.:.||..:...|: :.::.:.  ::.:|| :..:::|||  .|: :
Zfish   564 PFDLSLWACIAGTVLLVGTLVYLLNWLNPPRLPMGSVSSTTLYNSMWF-VYGSFVQQG--GEVPY 625

  Fly   410 RLFSTRLLISLSCIFSFMLMQFY----GAFIVGSLLSESARSIVNL-------------QALYDS 457
            ...:||:::.:..:|:.:::..|    .||:..|.:..|.:|:.:|             .|:||.
Zfish   626 TTLATRMMMGVWWLFALIVISSYTANLAAFLTISRIENSIQSLQDLAKQTDLPYGTVLDSAVYDQ 690

  Fly   458 NLAIGMENISYNFPIFTNTSNQLVRDVYVKKICKSGEHNIMSLQQGAERIIQGRFAF--HTAIDR 520
            ..:.||.....: |:::.....:.|       ....|:|:...::|..::..|||||  ..|:  
Zfish   691 VRSKGMNPFERD-PMYSQMWRMINR-------TGGAENNVEESKEGIRKVKYGRFAFVWDAAV-- 745

  Fly   521 MYRLLLELQMDEAEFCDLQEVMFNLP---YDSGSVMPKGSPWREHLAHALLHFRATGLLQYNDKK 582
                 ||......|.|.|..|..|:.   |  |..|..|||:|:..:..:|..:..|.:.....|
Zfish   746 -----LEYVAINDEDCSLYTVSNNVADRGY--GMAMQHGSPYRDIFSQRILELQQNGDMDILKLK 803

  Fly   583 WMVRRPDCSLF-----KTSQAEVDLEHFAPALFALALAMVASALVFLLELFLHWLPDFRRRLGT 641
            |..|...|.|:     :.|.:.:|:..||...|.||..:|.|.|:..:|.   |   :.||.|:
Zfish   804 WWPRDSPCDLYSPVGTRKSGSALDIHSFAGVFFVLAAGVVLSCLIATVET---W---WTRRKGS 861

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 5/14 (36%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 82/390 (21%)
Lig_chan 355..602 CDD:278489 61/279 (22%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 21/115 (18%)
ANF_receptor 42..404 CDD:279440 19/86 (22%)
PBP2_iGluR_delta_2 440..806 CDD:270449 84/392 (21%)
Lig_chan 568..841 CDD:278489 67/292 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591511
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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