DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and Grik

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster


Alignment Length:576 Identity:125/576 - (21%)
Similarity:215/576 - (37%) Gaps:145/576 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 NNSLAW---FILGSGRESLPVEQLIDQLLSGYRMGIDAD-----ITVALRGPDNASMLFYDVYRI 181
            |:..||   :.|.:..:||.:..|...:...|. |:..|     |.:|:.|              
  Fly   329 NDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYE-GLRTDFKLEVIELAVSG-------------- 378

  Fly   182 SRQANTPLIIEKKGLWTHSGGYQKFGNFKNTWVIRR-----------RNFLNVTLIGSTVLTEKP 235
                     ::|.|.|:...|:|:          .|           |:.:|.:.:..|.::| |
  Fly   379 ---------MQKIGQWSGEDGFQE----------NRPAPAHSLEPDMRSLVNKSFVVITAISE-P 423

  Fly   236 PGF--GDMEYLADDKQLQQLDPMQRKTYQLFQLVERMFNLSLAISLTDKWGELLDN--------- 289
            .|.  ...|.|..:.|.:...            :|.:..||..:..:..|....||         
  Fly   424 YGMLKETSEKLEGNDQFEGFG------------IELIDELSKKLGFSYTWRLQEDNKYGGIDPKT 476

  Fly   290 GSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNI-FFEPLS 353
            |.|:|::.::....||..:..:....:|:..|.::....:..|..|||.|.:...|.. |..|.|
  Fly   477 GEWNGMLREIIDSRADMGITDLTMTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFS 541

  Fly   354 NQVW-WCVLALVTGSTILLLFHVRLE-----------RMLSNMENRFSF---VWFTMLETYLQQG 403
            .:|| |..||.: |.:|.:....||.           ...:.:||:|||   :||: :...||||
  Fly   542 GEVWLWLGLAYM-GVSISMFVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFS-IGALLQQG 604

  Fly   404 PANEIF-RLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSESARSIVNLQALYDS-NLAIGMENI 466
              :|:. :.:|||.:.:....|:.:|:..|.|.:...|..||..:.:|     |: :|:.....:
  Fly   605 --SELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPIN-----DADDLSKNKGGV 662

  Fly   467 SYNFPI------FTNTSN--------QLVRDVYVKKICKSGEHNIMSLQQGAERIIQGRFAFHTA 517
            :|...|      |...||        :.:||        :.::...:.|:|.:|:....:||   
  Fly   663 NYGAKIGGATFNFFKESNYPTYQRMYEFMRD--------NPQYMTNTNQEGVDRVENSNYAF--- 716

  Fly   518 IDRMYRLLLE---LQMDEAEFCDLQEVMFNLPYDS-GSVMPKGSPWREHLAHALLHFRATGLLQY 578
                   |:|   ::......|.|.:|...|.... |..|.|..|:|:.|:.|:|..:..|||..
  Fly   717 -------LMESTTIEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTK 774

  Fly   579 NDKKWMVRRPD---CSLFKTSQAEVDLE--HFAPALFALALAMVASALVFLLELFL 629
            ...||...:..   ||........|.||  :.......:.:.......|.|||:.|
  Fly   775 MKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLLEMVL 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 93/407 (23%)
Lig_chan 355..602 CDD:278489 68/284 (24%)
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 16/85 (19%)
ANF_receptor 53..374 CDD:279440 11/45 (24%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 95/409 (23%)
Lig_chan 543..816 CDD:278489 70/299 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462821
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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