DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and Nmdar1

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:749 Identity:157/749 - (20%)
Similarity:295/749 - (39%) Gaps:190/749 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 AAFED------FLRS------------EHLSH-----VLVVRGDDADG----------------D 61
            |||.|      |||:            |.|||     |:::...|.||                |
  Fly   139 AAFSDKNIHVSFLRTVPPYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRFQTTSQTYYDD 203

  Fly    62 WKIECHQKLLANYRVQFYRPEMSANFEDL-----------MFYGSPRTAVLVLNSE--------- 106
            ..:....:|:..     :.|::.:..|.|           :.|.|...|.::....         
  Fly   204 VDVRATVELIVE-----FEPKLESFTEHLIDMKTAQSRVYLMYASTEDAQVIFRDAGEYNMTGEG 263

  Fly   107 HV-LVRRQ----------VFGVA-----SEAGYFNNSLAWFILGSG-RESLPVEQLID------- 147
            || :|..|          |.|:.     |:.|:..:|:  ::|.|. :|.:..|.:.:       
  Fly   264 HVWIVTEQALFSNNTPDGVLGLQLEHAHSDKGHIRDSV--YVLASAIKEMISNETIAEAPKDCGD 326

  Fly   148 ---QLLSGYRM-------GIDADITVALRGPDNASMLF--YDVYRISRQANTPLIIEKKGLWTHS 200
               ...||.|:       .|..: |..:...||...::  |||..|..|....::    |.:::.
  Fly   327 SAVNWESGKRLFQYLKSRNITGE-TGQVAFDDNGDRIYAGYDVINIREQQKKHVV----GKFSYD 386

  Fly   201 GGYQK----FGNFKNTWVIRRR----NFLNVTLIGSTVLTEKPPGFGDMEYLADDKQLQQLDPMQ 257
            ....|    ..:.:..|..::|    ..:..|.:....:.|||  |..:..:.||:  .:.:|.:
  Fly   387 SMRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKP--FVYVRRMGDDE--FRCEPDE 447

  Fly   258 R-----------------KTY---QLFQLVERM-FNLSLAISLTDKWGE-LLDNGS--------W 292
            |                 :.|   .|.:|.:|: |...||:|...::|. :|.|.:        |
  Fly   448 RPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEW 512

  Fly   293 SGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNIFFEPLSNQVW 357
            :|::|::.:..||..|.|:....:|..|:::|.....|.|..|.:.|.||.....|.:|.||.:|
  Fly   513 TGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLW 577

  Fly   358 WCVLALVTGSTILLLFHV----------RLERMLSNME---NRFSFVWF---TMLETYLQQGPAN 406
              :|.:|:...:.|:.::          :|....||.|   |..|.|||   .:|.:.:.:|.. 
  Fly   578 --ILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKALNLSSAVWFAWGVLLNSGIGEGTP- 639

  Fly   407 EIFRLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSESARSIVNLQALYDSNLAIGMENISYNFP 471
               |.||.|:|..:...|:.:::..|.|.:...|:.|  |....|..:.|:.|...|||::....
  Fly   640 ---RSFSARVLGMVWAGFAMIIVASYTANLAAFLVLE--RPKTKLSGINDARLRNTMENLTCATV 699

  Fly   472 IFTNTSNQLVRDVYVKKICKSGE-HNIMSLQQGAERIIQGR-FAFHTAIDRMYRLLLELQMDEAE 534
            ..::......|.|.:..:.::.| :|..:.:|..:.:.:|: .||.....|       |:.:.::
  Fly   700 KGSSVDMYFRRQVELSNMYRTMEANNYATAEQAIQDVKKGKLMAFIWDSSR-------LEYEASK 757

  Fly   535 FCDL---QEVMFNLPYDSGSVMPKGSPWREHLAHALLHFRATGLLQYNDKKWMVR---RPDCSLF 593
            .|:|   .|:.....|..|  :.|||||.:.:..|:|.|..:|.::..||:|:..   :.:|.||
  Fly   758 DCELVTAGELFGRSGYGIG--LQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQNCELF 820

  Fly   594 KTSQAEVDLEHFAPALFALALAMVASALVFLLEL 627
            :.:...:.|::.|.....:.:.:.....:.::|:
  Fly   821 EKTPNTLGLKNMAGVFILVGVGIAGGVGLIIIEV 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 14/94 (15%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 98/411 (24%)
Lig_chan 355..602 CDD:278489 62/270 (23%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 51/277 (18%)
ANF_receptor 58..371 CDD:279440 46/239 (19%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 99/421 (24%)
HisJ 451..>558 CDD:223904 24/106 (23%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 38/140 (27%)
Lig_chan 575..838 CDD:278489 64/279 (23%)
CaM_bdg_C0 854..882 CDD:287524 0/1 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462967
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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