DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and GluRIA

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster


Alignment Length:597 Identity:116/597 - (19%)
Similarity:215/597 - (36%) Gaps:155/597 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 NNSLAWFILGSGRESLPVEQ--LIDQLLSGYRMGIDADITVALRGPDNASMLFYDVYRISRQANT 187
            |.|..|.        .|.||  .|.::|.  ::.||. ::..:|..::...:.|.::.:....|:
  Fly   385 NTSKGWV--------TPWEQGEKISRVLR--KVEIDG-LSGEIRFDEDGRRINYTLHVVEMSVNS 438

  Fly   188 PLIIEKKGLW--------THSGGY--------QKFGNFKNTWVIRRRNFLNVTLIGSTVLTEKPP 236
            .|  ::...|        .||..|        ...|::.     |...::..:|:....|:.|..
  Fly   439 TL--QQVAEWRDDAGLLPLHSHNYASSSRSASASTGDYD-----RNHTYIVSSLLEEPYLSLKQY 496

  Fly   237 GFGDMEYLADDKQLQQLDPMQRKTYQLFQLVERMFNLSLAISLTDKWGELLDN----GSWSGVMG 297
            .:|:        .|...|..:.....|..::.....:...|.|........:|    |.|.|::|
  Fly   497 TYGE--------SLVGNDRFEGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYAPGGWDGMVG 553

  Fly   298 QVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNI-----FFEPLSNQVW 357
            ::..:|||.|:..:....:|:..:.:|....|..|..:.:.|    :|..     |..|||.::|
  Fly   554 ELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKP----VKQTPGVFSFLNPLSQEIW 614

  Fly   358 WCVLALVTGSTILLLFHVRLE-------------------------RMLSNME--------NRFS 389
            ..|:....|.:.:|.|..|..                         ..||..:        |.|:
  Fly   615 ISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPPNEFT 679

  Fly   390 FV---WFTMLETYLQQG----PANEIFRLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSE---- 443
            .:   |:: |..::|||    |.:     .:.|:..::...|:.:|:..|.|.:...|..|    
  Fly   680 MLNSFWYS-LAAFMQQGCDITPPS-----IAGRIAAAVWWFFTIILISSYTANLAAFLTVERMVA 738

  Fly   444 --------SARSIVNL-QALYDS------NLAIGMENISYNFPIFTNTSNQLVRDVYVKKICKSG 493
                    :.::.||. ..||.|      ...||:.|..:.:    ..:||              
  Fly   739 PIKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEY----MNANQ-------------- 785

  Fly   494 EHNIMSLQQGAERIIQGRFAFHTAIDRMYRLLLELQMDE----AEFCDLQEVMFNLPYDS-GSVM 553
            .|::.:..:|..|:.|.:        ..|.||:|...:|    ...||..:|..|:.... |...
  Fly   786 HHSVHTYDEGIRRVRQSK--------GKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVAT 842

  Fly   554 PKGSPWREHLAHALLHFRATGLLQYNDKKWMVRRPDCSLFKTSQA--EVDLEHFAPALFALALAM 616
            |.|||.|:.|..|:|..:..|.|.....||...:.:|:|.:.:..  |:.|.:.|...:.|...:
  Fly   843 PIGSPLRKRLNEAVLTLKENGELLRIRNKWWFDKTECNLDQETSTPNELSLSNVAGIYYILIGGL 907

  Fly   617 VASALVFLLELF 628
            :.:.:|.::|.|
  Fly   908 LLAVIVAIMEFF 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 85/433 (20%)
Lig_chan 355..602 CDD:278489 62/312 (20%)
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 15/80 (19%)
ANF_receptor 53..434 CDD:279440 12/59 (20%)
PBP2_iGluR_AMPA 477..879 CDD:270433 87/445 (20%)
Lig_chan 612..907 CDD:278489 65/326 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462539
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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