DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and GluRIIE

DIOPT Version :10

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:747 Identity:146/747 - (19%)
Similarity:260/747 - (34%) Gaps:187/747 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TNFLELAAFEDFLRSEHLSHVLVVRGDDADGDWKIECHQKLLANYRVQFYRPEMSANFEDLMFYG 94
            |.|:.|....::|..  |:.:..:.|........:....:|..||:....|...|.: ..::..|
  Fly   159 TRFIFLYESAEYLNI--LNELTTMLGKSGTVITVLRYDMQLNGNYKQVLRRVRKSVD-NRIVVVG 220

  Fly    95 SPRTAVLVLNSEHVLVRRQVFGVASEAGYFNNSLAWFILGS------------------------ 135
            |..|....||.            |.:.|..|.... :|:|:                        
  Fly   221 SSETMPEFLNQ------------AQQVGIINEDYK-YIIGNLDFHSFDLEEYKYSEANITGLRLF 272

  Fly   136 GRESLPVEQLIDQLLSGYRMGID------ADITVALRGPDNASMLFYDVYRISRQA--NTPLIIE 192
            ..|.:.|::|:.:|  ||....|      ..|||.:       .|.||..::..|.  |.|....
  Fly   273 SPEKMAVKELLMKL--GYPTDQDEFRNGSCPITVEM-------ALTYDAVQLFAQTLKNLPFKPM 328

  Fly   193 KKGLWTHSGGYQKFG-NFKNTWVIRRRNFLNVTLIGS-------------TVLTEKPPGFGDMEY 243
            .:.....:...:..| :|||  .:|.....:..|.|.             .|:..:|.|...:..
  Fly   329 PQNCSQRTESVRDDGSSFKN--YMRTLRLTDRLLTGPIYFEGNVRKGYHLDVIELQPSGIVKVGT 391

  Fly   244 LADDKQL--QQLDP-----------MQRKTYQLF---------QLVERM-----------FNLSL 275
            ..:|:|.  |:|.|           :..||:.:.         ||||..           :.:.|
  Fly   392 WDEDRQYRPQRLAPTTAQFDSVDNSLANKTFIILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDL 456

  Fly   276 AISLTDKWGELL-------DNGSW-------SGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAV 326
            ...|.||.|...       |.||:       :|::.::.:..||.|:..:....:|:..:.::..
  Fly   457 IKELADKLGFNFTFVNGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIP 521

  Fly   327 LHTQNIHFLFRHPRRSHIKNI-FFEPLSNQVWWCVLALVTGSTILLLFHVRLE-----------R 379
            .....|..|:..|:::..:.. |.:|.|.:|||.:.....|.::......||.           .
  Fly   522 FMNLGIAILYLKPQKATPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIE 586

  Fly   380 MLSNMENRFSF---VWFTMLETYLQQGPANEIF-RLFSTRLLISLSCIFSFMLMQFYGAFIVGSL 440
            ....:||:|:.   :||| ....||||  :||. :..|||.:.|....|:.:::..|.|.:...|
  Fly   587 EPEELENQFTLGNSIWFT-TGALLQQG--SEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFL 648

  Fly   441 LSESARSIVNLQALYDSNLAIGMENISYNFPIFTNTSNQLV--RDVYVKKICKSGEHNIMSL--- 500
            ..|..:|::|..    .:||...:.:.|......:|.|..:  .:...||:.|....|...|   
  Fly   649 TIEKPQSLINSV----DDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQYLTED 709

  Fly   501 -QQGAERIIQGRFAFHTAIDRMYRLLLE---LQMDEAEFCDLQEVMFNLPYDS-GSVMPKGSPWR 560
             .:|..|:         ..:..|..|:|   ::.:....|:|:::...|.... |..|.|..|.|
  Fly   710 NMEGVNRV---------KTNTHYAFLMESTSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWPHR 765

  Fly   561 EHLAHALLHFRATGLLQYNDKKWMVR-----------RPDCSLFKTSQAEVDLEHFAPALFALAL 614
            ....:|||..:..|:|:....||...           .||.:       .:|:.:.....|.|.:
  Fly   766 GKFNNALLELQEQGVLEKMKNKWWNEVGTGICATKEDAPDAT-------PLDMNNLEGVFFVLLV 823

  Fly   615 AM-------VASALVFLLELFLHWLPDFRRRL 639
            ..       :.|.::|:::...|:....|..|
  Fly   824 GSCCALLYGIISWVLFVMKKAHHYRVPLRDAL 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 ATP-sulfurylase <54..>112 CDD:460310 11/57 (19%)
Periplasmic_Binding_Protein_Type_2 <282..>355 CDD:473866 16/87 (18%)
Lig_chan 353..602 CDD:459656 62/284 (22%)
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 40..402 CDD:380605 49/269 (18%)
PBP2_iGluR_Kainate 419..790 CDD:270432 84/386 (22%)
Lig_chan 551..824 CDD:459656 64/295 (22%)

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