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Protein Alignment Ir84a and Grik1

DIOPT Version :9

Sequence 1:	NP_649720.2	Gene:	Ir84a / 40891	FlyBaseID:	FBgn0037501	Length:	644	Species:	Drosophila melanogaster
Sequence 2:	NP_001104587.1	Gene:	Grik1 / 29559	RGDID:	2732	Length:	949	Species:	Rattus norvegicus

Alignment Length:	523	Identity:	124/523 - (23%)
Similarity:	206/523 - (39%)	Gaps:	90/523 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   152 GYRMGIDADITVALR--GPDNA----SMLFYDVYRISRQANTPLIIEKKGLWTHSGGYQKFGNFK 210
            |.|...|.|| ::|:  |.:.|    |...|.|::            |.|:|..:.|.......:
  Rat   383 GLRKDFDLDI-ISLKEEGTEKASGEVSKHLYKVWK------------KIGIWNSNSGLNMTDGNR 434

  Fly   211 NTWVIRRRN----FLNVTLIGSTVLTEKPPGFGDMEYLADDKQLQQLDPMQRKTYQLFQLVERMF 271
            :    |..|    ..|.|||.:|:| |:|    .:.|...||.|...|..:.....|.:.:..:.
  Rat   435 D----RSNNITDSLANRTLIVTTIL-EEP----YVMYRKSDKPLYGNDRFEGYCLDLLKELSNIL 490

  Fly   272 NLSLAISLT--DKWGELLDNGSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHF 334
            .....:.|.  .|:|...|.|.|:|::.::....||.||.|:.....|:..:.:|....|..|..
  Rat   491 GFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISI 555

  Fly   335 LFRHPRRSHIKNI-FFEPLSNQVWWCVLALVTGSTILLLFHVRLERM-----------LSNMENR 387
            |:|.|..::.... |..|||..:|..||....|.:.:|....|....           ...:||.
  Rat   556 LYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENN 620

  Fly   388 FSFV---WFTMLETYLQQGPANEIF-RLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSESARSI 448
            |:.:   ||. :...:|||  :|:. :..|||::..:...|:.:::..|.|.:...|..|...|.
  Rat   621 FTLLNSFWFG-VGALMQQG--SELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESP 682

  Fly   449 VNLQALYDS--NLAIGMENISYNFPIFTNTSNQLVRD----VYVKKICKSGEHNI---MSLQQGA 504
            :      ||  :|| ....|.|.          .|||    .:.||...|....:   ||.:|.:
  Rat   683 I------DSADDLA-KQTKIEYG----------AVRDGSTMTFFKKSKISTYEKMWAFMSSRQQS 730

  Fly   505 ERIIQGRFAFHTAIDRMYRLLLE---LQMDEAEFCDLQEV---MFNLPYDSGSVMPKGSPWREHL 563
            ..:..........:...|.||:|   ::......|:|.::   :.:..|..|:  |.|||:|:.:
  Rat   731 ALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGT--PIGSPYRDKI 793

  Fly   564 AHALLHFRATGLLQYNDKKWMVRRPDCSLFKTSQAE-VDLEHFAPALFALALAMVASALVFLLEL 627
            ..|:|..:..|.|....:||. |...|....:.:|. :.:|:.......||..:|.|..|.:.|
  Rat   794 TIAILQLQEEGKLHMMKEKWW-RGNGCPEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGE- 856

  Fly   628 FLH 630
            ||:
  Rat   857 FLY 859

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.