DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Ir84a and Grik5

DIOPT Version :9

Sequence 1:	NP_649720.2	Gene:	Ir84a / 40891	FlyBaseID:	FBgn0037501	Length:	644	Species:	Drosophila melanogaster
Sequence 2:	XP_006228444.1	Gene:	Grik5 / 24407	RGDID:	2735	Length:	980	Species:	Rattus norvegicus

Alignment Length:	698	Identity:	153/698 - (21%)
Similarity:	272/698 - (38%)	Gaps:	191/698 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly    14 IILTAFLRVLQIESI---NTNFLELAAFE-------DFLRSEHLSHVLVVRGDDADGDWKIECHQ 68
            |:.|....:|.::.|   ::|.|..:.|.       :|:||.::|             |:..|
  Rat   243 ILTTMDFPILHLDGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMS-------------WRENC-- 292

  Fly    69 KLLANYRVQFYRPEMSANFEDLMFYGSPRTAVLVLNSEHVLV-------RRQVFGV--------- 117
                               |...:.|...:|.|:.::.||:|       |.|..||
  Rat   293 -------------------EASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSAN 338

  Fly   118 -----ASEAGY--------------FNNSLAWFILGSGRESLPVEQLIDQLLSGYR-MGI-DADI 161
                 .|...|              ||:        .|:.:....:::::...|:| :|: .::.
  Rat   339 IWPHGTSLMNYLRMVEYDGLTGRVEFNS--------KGQRTNYTLRILEKSRQGHREIGVWYSNR 395

  Fly   162 TVALRGPDNASMLFYDVYRISRQANTPLIIEKKGLWTHSGGYQKFGNFKNTWVIRRRNFLNVTLI 226
            |:|:    ||:.|  |:......||..|::..              ..:|.:|:||.||  ..|.
  Rat   396 TLAM----NATTL--DINLSQTLANKTLVVTT--------------ILENPYVMRRPNF--QALS 438

  Fly   227 GSTVLTEKPPGF-GDMEYLADDKQLQQLDPMQRKTYQLFQLVERMFNLSLAISLTDKWGELLDNG 290
            |:    |:..|| .||        |::|..:.|..|:| :|||           ...:|....||
  Rat   439 GN----ERFEGFCVDM--------LRELAELLRFRYRL-RLVE-----------DGLYGAPEPNG 479

  Fly   291 SWSGVMGQVTSRE-ADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFR-HPRRSHIKNIFFEPLS 353
            ||:|::|::.:|: ||.||.......:|:..:.:|....|..|..|:| |..|......|.:|.|
  Rat   480 SWTGMVGELINRQKADLAVAAFTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFS 544

  Fly   354 NQVW-WCVLALVTGSTILLLF-----------HVRLERMLSNMENRFSF---VWFTMLETYLQQG 403
            ..|| :.:||.:..|.:|.|.           |..|......:||:::.   :||. :..::|||
  Rat   545 PAVWLFMLLAYLAVSCVLFLAARLSPYEWYNPHPCLRARPHILENQYTLGNSLWFP-VGGFMQQG 608

  Fly   404 PANEIF-RLFSTRLLISLSCIFSFMLMQFYGAFIVGSLL-------SESARSIVNLQALYDSNLA 460
              :||. |..|||.:..:...|:.:::..|.|.:...|.       .|||..:.:     .:|:.
  Rat   609 --SEIMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPVESADDLAD-----QTNIE 666

  Fly   461 IGMENISYNFPIFTNTSNQLVRDVYVKKICKSGEHNIMSLQQGAERIIQGRFAFHTAIDRMYRLL 525
            .|..:.......|.|:..|..:.::.....|.....:.|.::|..|::..|:||          |
  Rat   667 YGTIHAGSTMTFFQNSRYQTYQRMWNYMQSKQPSVFVKSTEEGIARVLNSRYAF----------L 721

  Fly   526 LELQMDEAE---FCDLQEV---MFNLPYDSGSVMPKGSPWREHLAHALLHFRATGLLQYNDKKWM 584
            ||..|:|..   .|:|.::   :....|..|  ||.|||:|:.:..|:|..:....|:...:||.
  Rat   722 LESTMNEYHRRLNCNLTQIGGLLDTKGYGIG--MPLGSPFRDEITLAILQLQENNRLEILKRKWW 784

  Fly   585 VRRPDCSLFKTSQAE-VDLEHFAPALFALALAMVASALVFLLELFLHW 631
             ....|...:..:|: :.:|:.......|...::.:..|.::|..  |
  Rat   785 -EGGRCPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAVMEFI--W 829

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Ir84a	NP_649720.2	nt_trans	<54..>112	CDD:294020	9/64 (14%)
		Periplasmic_Binding_Protein_Type_2	222..583	CDD:304360	97/392 (25%)
		Lig_chan	355..602	CDD:278489	63/276 (23%)
Grik5	XP_006228444.1	PBP1_iGluR_Kainate_KA1_2	23..401	CDD:380616	34/203 (17%)
Grik5	XP_006228444.1	Periplasmic_Binding_Protein_Type_2	414..785	CDD:389745	107/431 (25%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166350066
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.840