DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and Grik4

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:715 Identity:145/715 - (20%)
Similarity:264/715 - (36%) Gaps:199/715 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 KIEC---HQKLLANYRVQFYRPEMSANFED--------LMFYGSPRTAVLVLN-----SEHVLVR 111
            |.||   .:|||..:.:.  :..:|....|        |......:||.::::     |..:|::
  Rat   168 KAECLLNLEKLLRQFLIS--KDTLSVRMLDDTRDPTPLLKEIRDDKTATIIIHANASMSHTILLK 230

  Fly   112 RQVFGVASE--------------------------AGY--FNNSLAWFILGSGRESLPVEQLIDQ 148
            ....|:.|.                          .|:  ||.|.|:|           ::....
  Rat   231 AAELGMVSAYYTYIFTNLEFSLQRMDSLVDDRVNILGFSIFNQSHAFF-----------QEFSQS 284

  Fly   149 LLSGYRMGIDADITVALRGPDNASMLFYD--------VYRISR-----------------QANTP 188
            |...::...|   .|...||..:|.|.:|        |..::|                 |..|.
  Rat   285 LNQSWQENCD---HVPFTGPALSSALLFDAVYAVVTAVQELNRSQEIGVKPLSCGSAQIWQHGTS 346

  Fly   189 L-----IIEKKGLWTH--------------------SGGYQKFGNFKNTWVIRR----------- 217
            |     ::|.:||..|                    ..|:::.|.    |.:..           
  Rat   347 LMNYLRMVELEGLTGHIEFNSKGQRSNYALKILQFTRNGFRQIGQ----WHVAEGLSMDSRLYAS 407

  Fly   218 ---RNFLNVTLIGSTVLTEKPPGFGDMEYLADDKQLQQLDPMQRKTYQLF------QLVERM-FN 272
               .:..|.||:.:|:| |.|       ||......|.::...|  |:.|      :|.|.: ||
  Rat   408 NISDSLFNTTLVVTTIL-ENP-------YLMLKGNHQDMEGNDR--YEGFCVDMLKELAEILRFN 462

  Fly   273 LSLAISLTDKWGELLDNGSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFR 337
            ..:.:.....:|....||:|:|::|::.:|:||.||..:....:|:..:.:|....|..|..|:|
  Rat   463 YKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKPFMTLGISILYR 527

  Fly   338 -HPRRSHIKNIFFEPLSNQVW-WCVLALVTGSTILLLF-----------HVRLERMLSNMENRFS 389
             |..|......|.:|.|..|| :.:||.:..|.:|.|.           |...:...:.:.|::|
  Rat   528 VHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQYS 592

  Fly   390 F---VWFTMLETYLQQG----PANEIFRLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSESARS 447
            .   :||. :..::|||    |     |..|||.:..:...|:.:::..|.|.:...|..:  |.
  Rat   593 LGNSLWFP-VGGFMQQGSTIAP-----RALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQ--RM 649

  Fly   448 IVNLQALYD----SNLAIGMENISYNFPIFTNTSNQLVRDVYVKKICKSGEHNIMSLQQGAERII 508
            .|.::::.|    :.:..|..:...:...|.|:..|..:.::.....|.....:.|.::|..|::
  Rat   650 EVPIESVDDLADQTAIEYGTIHGGSSMTFFQNSRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVL 714

  Fly   509 QGRFAFHTAIDRMYRLLLELQMDE---AEFCDLQEV---MFNLPYDSGSVMPKGSPWREHLAHAL 567
            ...:||          |||..|:|   ...|:|.::   :....|..|  ||.||.:|:....|:
  Rat   715 NSNYAF----------LLESTMNEYYRQRNCNLTQIGGLLDTKGYGIG--MPVGSVFRDEFDLAI 767

  Fly   568 LHFRATGLLQYNDKKWMVRRPDCSLFKTSQAE-VDLEHFAPALFALALAMVASALVFLLELFLHW 631
            |..:....|:...:||. ....|...:..:|: :.:|:.......|...::.:..:.:|| || |
  Rat   768 LQLQENNRLEILKRKWW-EGGKCPKEEDHRAKGLGMENIGGIFVVLICGLIVAIFMAMLE-FL-W 829

  Fly   632  631
              Rat   830  829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 13/64 (20%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 93/397 (23%)
Lig_chan 355..602 CDD:278489 58/276 (21%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:415822 41/253 (16%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 95/400 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349675
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

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