DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and gria2b

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_005157361.1 Gene:gria2b / 170451 ZFINID:ZDB-GENE-020125-4 Length:897 Species:Danio rerio


Alignment Length:672 Identity:139/672 - (20%)
Similarity:262/672 - (38%) Gaps:168/672 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 HVLVVRGDDADGDW-KIECHQKLLANYRVQFYRPEMSANF---------------EDLMFYGSPR 97
            |.::......|||. ||:.....::.:::..:...:.:.|               :..:.|.|..
Zfish   233 HYIIANLGFVDGDLSKIQYGGANVSGFQIVDFDDPLVSKFDQRWEALEEKEYPGADSKIRYTSAL 297

  Fly    98 T--AVLVLNSEHVLVRRQVFGVASEAG----YFNNSLAWFILGSGRESLPVEQLIDQLLSGYRM- 155
            |  ||.|:......:.:|...::..|.    ..|.::.|      .:.:.:|:.:.|:    |: 
Zfish   298 TYDAVQVMTEAFRYLHKQRIDISRRANNGDCLANPAVPW------AQGVEIERALKQV----RVD 352

  Fly   156 GIDADITVALRGPDNASMLFYDVY--RISRQANTPLIIEKKGLWTHSGGYQKFG--NFKNTWVIR 216
            |:..:|.             :|.|  |::...|   ::|.|     |.|..|.|  |..:..|:.
Zfish   353 GLTGNIQ-------------FDQYGKRVNYTVN---VMELK-----SNGAVKIGYWNEVDKMVVT 396

  Fly   217 RRNFL--------NVTLIGSTVLTEKPPGFGDMEYLADDKQLQQLDPMQRKTYQLFQLVERM--F 271
            :.:..        |.|:|.:|:| |.|       |:           |.:|...||...||.  :
Zfish   397 KSDLFPNDTMGLENKTVIVTTIL-EAP-------YV-----------MLKKNADLFMDNERYEGY 442

  Fly   272 NLSLAISLTDKWG-----ELLDNGS----------WSGVMGQVTSREADFAVCPIRFVLDRQPYV 321
            .:.||..:....|     :::.:|.          |:|::|::...:||.||.|:...|.|:..:
Zfish   443 CVDLAAEIAKHCGFKYQLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVI 507

  Fly   322 QYSAVLHTQNIHFLFRHPRRSHIKNI-FFEPLSNQVWWCVLALVTGSTILLLFHVRLE------- 378
            .:|....:..|..:.:.|::|..... |.:||:.::|.|::....|.:::|....|..       
Zfish   508 DFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTE 572

  Fly   379 -----RMLSNMENR----FSFVWFTMLETYLQQG----PANEIFRLFSTRLLISLSCIFSFMLMQ 430
                 ::.:|....    |:.:||: |..:::||    |     |..|.|::..:...|:.:::.
Zfish   573 EYEDGQIQTNESTNEFGIFNSLWFS-LGAFMRQGCDISP-----RSLSGRIVGGVWWFFTLIIIS 631

  Fly   431 FYGAFIVGSLLSESARSIVNLQALYD----SNLAIGMENISYNFPIFTNTSNQLVRDVYVKKICK 491
            .|.|.:...|..|  |.:..:::..|    :.:|.|..:.......|..:...|...::.  ..|
Zfish   632 SYTANLAAFLTVE--RMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIALFDKMWT--YMK 692

  Fly   492 SGEHNIM--SLQQGAERI--IQGRFAFHTAIDRMYRLLLELQMDE----AEFCDLQEVMFNLPYD 548
            ..|.::.  :..:|..|:  .:|::|:          |||..|:|    .:.||..:|..||  |
Zfish   693 GAEPSVFVKTTAEGVMRVRKSKGKYAY----------LLESTMNEYIEQRKPCDTMKVGGNL--D 745

  Fly   549 S---GSVMPKGSPWREHLAHALLHFRATGLLQYNDKKWMVRRPDC------SLFKTSQAEVDLEH 604
            |   |...||||..|..:..|:|.....|||.....||...:.:|      |..|||  .:.|.:
Zfish   746 SKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKEKTS--ALSLSN 808

  Fly   605 FAPALFALALAMVASALVFLLE 626
            .|...:.|...:..:.||.|:|
Zfish   809 VAGVFYILVGGLGLAMLVALVE 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 12/75 (16%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 91/413 (22%)
Lig_chan 355..602 CDD:278489 63/287 (22%)
gria2bXP_005157361.1 PBP1_iGluR_AMPA_GluR2 27..395 CDD:107384 33/192 (17%)
ANF_receptor 55..377 CDD:279440 27/169 (16%)
PBP2_iGluR_AMPA 410..790 CDD:270433 93/420 (22%)
Lig_chan 542..820 CDD:278489 66/301 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591569
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.940

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