DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir84a and Grin2b

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001350679.1 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:748 Identity:136/748 - (18%)
Similarity:253/748 - (33%) Gaps:204/748 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IESINTNFLELAAFEDF---LRSE--------HLSHVLVVRGDDADGDWKIECHQKLLANYRVQF 78
            |.||.|.:  ...::||   :||.        .|..||::.....|||.||:...|.|.:..:..
Mouse   168 IFSIVTTY--FPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILL 230

  Fly    79 YRPEMSANFEDLMFYGSPRTAVLVLNSEHVLVRRQVFGVASEAGYFNNSLAWFI---LGSGRESL 140
            |..:..|.:                          :|.||:..|.......|.:   :....:::
Mouse   231 YCTKEEATY--------------------------IFEVANSVGLTGYGYTWIVPSLVAGDTDTV 269

  Fly   141 PVEQLIDQLLSGY-----------RMGIDADITVALRG--------PDNASMLFYD----VYRIS 182
            |.|.....:...|           |.|| |.||.|...        |:..|..:..    :|: |
Mouse   270 PSEFPTGLISVSYDEWDYGLPARVRDGI-AIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQ-S 332

  Fly   183 RQANTPLI---IEKKGLWTHSGGYQ-----------------KFGNFKN--------TW------ 213
            ...|..||   .|.:.|.....|||                 :.|.:|:        .|      
Mouse   333 NMLNRYLINVTFEGRNLSFSEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRMCPE 397

  Fly   214 --------------------VIRRRNFLNVTLIGSTV----------LTEKPPGF------GDME 242
                                ::...:.|:.|.:.:||          .|::.||:      |   
Mouse   398 TEEQEDDHLSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQKRIISENKTDEEPGYIKKCCKG--- 459

  Fly   243 YLADDKQLQQLDPMQRKTYQLFQLVERMFNLSLAISLTDKWGELLDNGSWSGVMGQVTSREADFA 307
            :..|  .|:::....:.||.|:            :....|.|:.: ||:|:|::|:|..:.|..|
Mouse   460 FCID--ILKKISKSVKFTYDLY------------LVTNGKHGKKI-NGTWNGMIGEVVMKRAYMA 509

  Fly   308 VCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNIFFEPLSNQVW--WCVLALVTGSTIL 370
            |..:....:|...|.:|.......|..:......:...:.|.||.|..||  ..|:.|:..:..:
Mouse   510 VGSLTINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAV 574

  Fly   371 LLFH----VRLERMLSN----------MENRFSFVWFTMLETYLQ-QGPANEIFRLFSTRLLISL 420
            .:|.    |...|.|::          :......:|..:....:. |.|...     ::::::|:
Mouse   575 FVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGT-----TSKIMVSV 634

  Fly   421 SCIFSFMLMQFYGAFIVGSLLSESARSIVNLQALYDSNLAIGME-NISYNFPIFTNTSNQL-VRD 483
            ...|:.:.:..|.|.:...::.|  ..:..:..|.|.......: :..:.|....|.|.:. :|:
Mouse   635 WAFFAVIFLASYTANLAAFMIQE--EYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIRN 697

  Fly   484 VYVKKICKSGEHN-------IMSLQQGAERIIQGRFAFHTAIDRMYRLLLELQMDEAEFCDLQEV 541
            .|.:.....|:.|       ::||:.|.    ...|.:..|:       |.......|.|.|..:
Mouse   698 NYAEMHAYMGKFNQRGVDDALLSLKTGK----LDAFIYDAAV-------LNYMAGRDEGCKLVTI 751

  Fly   542 MFNLPYDS---GSVMPKGSPWREHLAHALLHFRATGLLQYNDKKWMVRRPDCSLFKTSQAEVDLE 603
            .....:.|   |..:.|.|.|:..:..|:|.....|.::..:..|:.........:...:::|::
Mouse   752 GSGKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQLDID 816

  Fly   604 HFAPALFALALAMVASALVFLLELFLHWLPDFR 636
            :.|...:.|..||..|.:.|:.|...:|  .||
Mouse   817 NMAGVFYMLGAAMALSLITFICEHLFYW--QFR 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 9/57 (16%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 73/405 (18%)
Lig_chan 355..602 CDD:278489 43/275 (16%)
Grin2bNP_001350679.1 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 49/249 (20%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 75/435 (17%)
NMDAR2_C 840..1482 CDD:402274 3/10 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846443
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.