DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and Grik1

DIOPT Version :10

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001391957.1 Gene:Grik1 / 14805 MGIID:95814 Length:949 Species:Mus musculus


Alignment Length:616 Identity:144/616 - (23%)
Similarity:236/616 - (38%) Gaps:117/616 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 PEMSA-----NFEDLMFYGSPRTAVL--VLNSEHVLVRRQVFGVASEAGYFNNSLA--------- 129
            |.:|:     :.|.|.....|.|.:|  |:.:|..|:...|:.||. |.:..:.|.         
Mouse   288 PHVSSIIEKWSMERLQAPPRPETGLLDGVMTTEAALMYDAVYMVAI-ASHRASQLTVSSLQCHRH 351

  Fly   130 --WFILGSGRESLPVEQLIDQL--------LSGYRMGIDADITVALR--GPDNA----SMLFYDV 178
              | .||....:|..|...|.|        ..|.|...|.|| ::|:  |.:.|    |...|.|
Mouse   352 KPW-RLGPRFMNLIKEARWDGLTGRITFNKTDGLRKDFDLDI-ISLKEEGTEKASGEVSKHLYKV 414

  Fly   179 YRISRQANTPLIIEKKGLWTHSGGYQKFGNFKNTWVIRRRN----FLNVTLIGSTVLTEKPPGFG 239
            ::            |.|:|..:.|.......::    |..|    ..|.|||.:|:| |:|    
Mouse   415 WK------------KIGIWNSNSGLNMTDGNRD----RSNNITDSLANRTLIVTTIL-EEP---- 458

  Fly   240 DMEYLADDKQLQQLDPMQRKTYQLFQLVERMFNLSLAISLT--DKWGELLDNGSWSGVMGQVTSR 302
            .:.|...||.|...|..:.....|.:.:..:......:.|.  .|:|...|.|.|:|::.::...
Mouse   459 YVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDH 523

  Fly   303 EADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNI-FFEPLSNQVWWCVLALVTG 366
            .||.||.|:.....|:..:.:|....|..|..|:|.|..::.... |..|||..:|..||....|
Mouse   524 RADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLG 588

  Fly   367 STILLLFHVRLERM-----------LSNMENRFSFV---WFTMLETYLQQGPANEIF-RLFSTRL 416
            .:.:|....|....           ...:||.|:.:   ||. :...:|||  :|:. :..|||:
Mouse   589 VSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFG-VGALMQQG--SELMPKALSTRI 650

  Fly   417 LISLSCIFSFMLMQFYGAFIVGSLLSESARSIVNLQALYDS--NLAIGMENISYNFPIFTNTSNQ 479
            :..:...|:.:::..|.|.:...|..|...|.:      ||  :|| ....|.|.          
Mouse   651 VGGIWWFFTLIIISSYTANLAAFLTVERMESPI------DSADDLA-KQTKIEYG---------- 698

  Fly   480 LVRD----VYVKKICKSGEHNI---MSLQQGAERIIQGRFAFHTAIDRMYRLLLE---LQMDEAE 534
            .|||    .:.||...|....:   ||.:|.:..:..........:...|.||:|   ::.....
Mouse   699 AVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQR 763

  Fly   535 FCDLQEV---MFNLPYDSGSVMPKGSPWREHLAHALLHFRATGLLQYNDKKWMVRRPDCSLFKTS 596
            .|:|.::   :.:..|..|:  |.|||:|:.:..|:|..:..|.|....:||. |...|....:.
Mouse   764 NCNLTQIGGLIDSKGYGVGT--PIGSPYRDKITIAILQLQEEGKLHMMKEKWW-RGNGCPEEDSK 825

  Fly   597 QAE-VDLEHFAPALFALALAMVASALVFLLE 626
            :|. :.:|:.......||..:|.|..|.:.|
Mouse   826 EASALGVENIGGIFIVLAAGLVLSVFVAIGE 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 ATP-sulfurylase <54..>112 CDD:460310 10/37 (27%)
Periplasmic_Binding_Protein_Type_2 <282..>355 CDD:473866 22/73 (30%)
Lig_chan 353..602 CDD:459656 62/279 (22%)
Grik1NP_001391957.1 PBP1_iGluR_Kainate 38..431 CDD:380605 37/157 (24%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:473866 95/396 (24%)

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