DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and Gria4

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_006509904.1 Gene:Gria4 / 14802 MGIID:95811 Length:912 Species:Mus musculus


Alignment Length:615 Identity:136/615 - (22%)
Similarity:240/615 - (39%) Gaps:156/615 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 YGSPRT--AVLVLNSEHVLVRRQVFGVASEAGYFNNSLA-----WFILGSGRESLPVEQLIDQLL 150
            |.|..|  .|||:......:|||...: |..|...:.||     |   |.|   :.:|:.:.|:.
Mouse   296 YTSALTYDGVLVMAETFRSLRRQKIDI-SRRGNAGDCLANPAAPW---GQG---IDMERTLKQVR 353

  Fly   151 SGYRMGIDADITVALRGPDNASMLFYDVYRISRQAN-TPLIIEKKGLWTHSGGY----------- 203
            .   .|:..::.             :|.|  .|:.| |..:.|.|.......||           
Mouse   354 I---QGLTGNVQ-------------FDHY--GRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQ 400

  Fly   204 --QKFGNFKNTWVIRRRNFLNVTLIGSTVLTEKPPGFGDMEYLADDKQLQQLDPMQRKTYQLFQL 266
              ...||  :|..|..|     |::.:|:: |.|       |:           |.:|.:::|:.
Mouse   401 DAPTLGN--DTAAIENR-----TVVVTTIM-ESP-------YV-----------MYKKNHEMFEG 439

  Fly   267 VERM----------------FNLSLAISLTDKWGEL-LDNGSWSGVMGQVTSREADFAVCPIRFV 314
            .::.                ....:||....|:|.. .|...|:|::|::...:|:.|:.|:...
Mouse   440 NDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTIT 504

  Fly   315 LDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNI-FFEPLSNQVWWCVLALVTGSTILLLFHVRLE 378
            |.|:..:.:|....:..|..:.:.|::|..... |.:||:.::|.|::....|.:::|....|..
Mouse   505 LVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS 569

  Fly   379 RMLSNMENR-----------------FSFVWFTMLETYLQQG----PANEIFRLFSTRLLISLSC 422
            ....:.|..                 |:.:||: |..::|||    |     |..|.|::..:..
Mouse   570 PYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFS-LGAFMQQGCDISP-----RSLSGRIVGGVWW 628

  Fly   423 IFSFMLMQFYGAFIVGSLLSESARSIVNLQALYDSNLAIGMENISYNFPIFTNTSNQLVR----D 483
            .|:.:::..|.|.:...|..|  |.:..:::..|  ||...| |:|. .:.:.::.:..|    .
Mouse   629 FFTLIIISSYTANLAAFLTVE--RMVSPIESAED--LAKQTE-IAYG-TLDSGSTKEFFRRSKIA 687

  Fly   484 VYVK--KICKSGEHNIM--SLQQGAERI--IQGRFAFHTAIDRMYRLLLELQMDE----AEFCDL 538
            ||.|  ...:|.|.::.  :..:|..|:  .:|:|||          |||..|:|    .:.||.
Mouse   688 VYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAF----------LLESTMNEYIEQRKPCDT 742

  Fly   539 QEVMFNLPYDS---GSVMPKGSPWREHLAHALLHFRATGLLQYNDKKWMVRRPDC----SLFKTS 596
            .:|..||  ||   |...||||..|..:..|:|.....|:|.....||...:.:|    |..|..
Mouse   743 MKVGGNL--DSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGECGPKDSGSKDK 805

  Fly   597 QAEVDLEHFAPALFALALAMVASALVFLLE 626
            .:.:.|.:.|...:.|...:..:.||.|:|
Mouse   806 TSALSLSNVAGVFYILVGGLGLAMLVALIE 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 6/20 (30%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 91/416 (22%)
Lig_chan 355..602 CDD:278489 68/288 (24%)
Gria4XP_006509904.1 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611 28/128 (22%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 94/428 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846538
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

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