DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and GRIN3B

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:423 Identity:88/423 - (20%)
Similarity:163/423 - (38%) Gaps:67/423 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 LVERM-----FNLSLAISLTDKWGELLDNGSWSGVMGQVTSREADFAVCPIRFVLDRQPYVQYSA 325
            |:||:     |:..|.:....|:|.|.| |.|:|::|.:.:..|..||........|...|.:::
Human   483 LLERLAEDTPFDFELYLVGDGKYGALRD-GRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTS 546

  Fly   326 VLHTQNIHFLFRHPRRSHIKNIFFEPLSNQVWWCVL-ALVTGSTILLLFHVRLERMLS----NME 385
            ...:.::..:.|....:.....|..||....|..|. ||...:..|.::..|....|:    |..
Human   547 PFFSTSLGIMVRARDTASPIGAFMWPLHWSTWLGVFAALHLTALFLTVYEWRSPYGLTPRGRNRS 611

  Fly   386 NRFSF-----VWFTML--ETYLQQGPANEIFRLFSTRLLISLSCIFSFMLMQFYGAFIVGSLLSE 443
            ..||:     :.:.:|  .|...:.|     :..:.|||::|..||..:::..|.|.:...::.:
Human   612 TVFSYSSALNLCYAILFRRTVSSKTP-----KCPTGRLLMNLWAIFCLLVLSSYTANLAAVMVGD 671

  Fly   444 SARSIVNLQALYDSNLAIGMENISYNFPIFTNTSNQLVRDVYVKKI-----CKSGEHNIMSLQQG 503
              ::...|..::|..|....:...:      .|..:...:.|:||.     .....|:..:..:|
Human   672 --KTFEELSGIHDPKLHHPAQGFRF------GTVWESSAEAYIKKSFPDMHAHMRRHSAPTTPRG 728

  Fly   504 AERIIQGRFAFHTAIDRMYRLLLELQMDEAEFCDLQEVMFNLPY---DSGSVMPKGSPWREHLAH 565
            ...:.......:..|  |.:.||:.::.....|.|..|  ..|:   ..|..:|:.||...:|:.
Human   729 VAMLTSDPPKLNAFI--MDKSLLDYEVSIDADCKLLTV--GKPFAIEGYGIGLPQNSPLTSNLSE 789

  Fly   566 ALLHFRATGLLQYNDKKWMVRRPDCS--LFK-TSQAEVDLEHFAPALFALALAMVASALV----- 622
            .:..::::|.:.....||....| |.  :|. |...::.:.||| .||.|....:.|||:     
Human   790 FISRYKSSGFIDLLHDKWYKMVP-CGKRVFAVTETLQMSIYHFA-GLFVLLCLGLGSALLSSLGE 852

  Fly   623 --FL------------LELFLHWLPDFRRRLGT 641
              |.            |:.:||......|.|.|
Human   853 HAFFRLALPRIRKGSRLQYWLHTSQKIHRALNT 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 66/341 (19%)
Lig_chan 355..602 CDD:278489 50/269 (19%)
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 19..405 CDD:107372
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 67/342 (20%)
Lig_chan 576..842 CDD:278489 56/284 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156116
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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