DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and grin2cb

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:846 Identity:145/846 - (17%)
Similarity:270/846 - (31%) Gaps:304/846 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PLIILTAFLRVLQIESINTNFLELAAFEDFLRSEHLSHVL-------------------VVRGDD 57
            |..:||...:.:..||::.     ..|||.:.||.::.:|                   ||....
Zfish    82 PRALLTRLCQTMAAESLHG-----VVFEDDVDSEAVAQILDFVSSQTSIPIVGISGGSAVVIPHK 141

  Fly    58 ADG----------DWKIECHQKLLANYR-----------------VQFYRP-------------- 81
            |||          |.:|....|::..|.                 |.:.|.              
Zfish   142 ADGSTFLQMGASIDQQINAMFKVMEEYNWGNFVVITSLYPGYETFVDYIRSFTDTSYFLWELQDV 206

  Fly    82 ---EMSANFEDLMFYGSPRTAVLV--LNSEHVLV------RRQVFGVASEAGYFNNSLAWFI--L 133
               |||....|:      ||..|:  ::|:..||      .:.:|.:||:.|.......|.:  |
Zfish   207 LSFEMSVGANDI------RTRRLLQQVDSQVYLVYCSHEEAQYLFRMASDVGLLGPGYIWIVPSL 265

  Fly   134 GSGR-ESLP--------VEQLIDQLLSGYRMGIDADITVALRG-----------PDNAS------ 172
            ..|. |:.|        :..:.|:.....|..:...:.:.::|           |:..|      
Zfish   266 AVGNPEAAPPASFPVGVISIITDRWRKTLRQRVREGVAIIVKGVHSFHKHRGFIPEGHSDCSSPV 330

  Fly   173 ------MLFYDVYRISRQ------------ANTPLII---EKKGLWTHSGGYQ------------ 204
                  .||..:..:|.:            .|..::|   :::..|...|.|:            
Zfish   331 KSYANNSLFRHMLNVSWEHKDLSFNSDGYLTNPSMVIIALDRENHWDKVGSYEGGILQMRYPVWP 395

  Fly   205 KFGNF----------------------------------KNTWVIRRRNFLNVTLIGSTVLTEKP 235
            ::|:|                                  :||...||::....::||.|      
Zfish   396 RYGSFLEPVSDNRHLTVATLEERPFVIVESVDPATGTCVRNTVPCRRQSNRTESIIGHT------ 454

  Fly   236 PGFGDMEYLADDKQLQQLDPMQRKTYQLF--QLVERM-----FNLSLAISLTDKWGELLDNGSWS 293
                              :|..:...:.|  .:::::     |:..|.:....|.|::: .|.|:
Zfish   455 ------------------EPYTKLCCKGFCIDILKKLSRTIKFSYDLYLVTNGKHGKMV-RGVWN 500

  Fly   294 GVMGQVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNIFFEPLSNQVW- 357
            |::|:|..:.||.|:..:....:|...|.:|.......|..:......:...:.|.||.|..|| 
Zfish   501 GMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWV 565

  Fly   358 -WCVLALVTGSTILLLFHVRLERMLSNMENRFSFVWF--TMLETYLQQGP----ANEIFRLF--- 412
             ..|:.|...:..:.:|..            ||.|.:  :::......||    ...::.|:   
Zfish   566 MMFVMCLTVVAVTVFVFEY------------FSPVGYNRSLVSAKAPGGPTFTIGKSVWLLWGIV 618

  Fly   413 -------------STRLLISLSCIFSFMLMQFYGAFIVGSLLSESARSIVNLQALYDSNLAIGME 464
                         ::::::.:...|:.:.:..|.|.:...::.|  :.|..:..|.|.......|
Zfish   619 FNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQE--QYIDTVSGLSDKKFQKPQE 681

  Fly   465 -----------------NISYNFPIFTNTSNQLVRDVYVKKICKSGEHNIMSLQQGAERIIQG-- 510
                             ||..|:|           |::.        |.|...|:|.|..:..  
Zfish   682 HYPPFRFGTVPNGSTERNIRSNYP-----------DMHT--------HMIKYNQKGVEEALNSLK 727

  Fly   511 -----RFAFHTAIDRMYRLLLELQMDEAEFCDL-----QEVMFNLPYDSGSVMPKGSPWREHLAH 565
                 .|.:..|:       |.....:.|.|.|     .:|.....|  |..:.|.|.|:..:..
Zfish   728 TGKLDAFIYDAAV-------LNYMAGKDEGCKLVTIGSGKVFATTGY--GIALQKDSRWKRPIDL 783

  Fly   566 ALLHFRATGLLQYNDKKWMVRRPDCSLFKTSQAEVDLEHFAPALFALALAMVASALVFLLELFLH 630
            |||.|...|..|..:..|:.........:...:::|:::.|...:.|.:||..|.|||..|..|:
Zfish   784 ALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLLY 848

  Fly   631 W 631
            |
Zfish   849 W 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 19/109 (17%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 72/420 (17%)
Lig_chan 355..602 CDD:278489 48/299 (16%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 54/324 (17%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 77/467 (16%)
NMDAR2_C 845..>932 CDD:313729 2/5 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591559
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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