DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir84a and grin2ca

DIOPT Version :9

Sequence 1:NP_649720.2 Gene:Ir84a / 40891 FlyBaseID:FBgn0037501 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001352716.1 Gene:grin2ca / 100003342 ZFINID:ZDB-GENE-070822-3 Length:1400 Species:Danio rerio


Alignment Length:687 Identity:127/687 - (18%)
Similarity:239/687 - (34%) Gaps:183/687 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 EMSAN-FEDLMFYGSPRTAVLVLNSEHVLV------RRQVFGVASEAGYFNNSLAWFI--LGSGR 137
            :|||: ..||    ..|..:..::::.:||      .:.:|.:|.|.|.......|||  |..|.
Zfish   211 DMSADGMNDL----RARRLLQQIDAQVLLVYCSHDEAQYLFSMAREVGLVGPGYIWFIPSLAVGN 271

  Fly   138 ------ESLPVEQLIDQLLSGYRMG----IDADITVALRG-----------------------PD 169
                  :|.|| .||..:...::|.    :...:.:.::|                       |.
Zfish   272 PNIAPPDSFPV-GLISIITDRWKMSLRNRVRDGVAIVVKGVESFRKQRGFIPDGHMDCLSPIRPA 335

  Fly   170 NASMLFYDVYRISRQ------------ANTPLII---EKKGLWTHSGGYQ------------KFG 207
            :...|:..:..:|.:            .|..:||   ::...|...|.|:            ::|
Zfish   336 SNGTLYRHMLNVSWENTDFSFNSDGYLVNPSMIIITLDRGRQWDKVGNYESGILQMRYPVWPRYG 400

  Fly   208 NF----------------------------------KNTWVIRRRNFLNVTLIGSTVLTEKP--- 235
            .|                                  .||...||::....|::|.|    :|   
Zfish   401 TFLEPVSDNRHLTVATLEERPFVIVEAVDPVTGTCLSNTVPCRRQSNKTETIVGHT----EPYTK 461

  Fly   236 ---PGFGDMEYLADDKQLQQLDPMQRKTYQLFQLVERMFNLSLAISLTDKWGELLDNGSWSGVMG 297
               .||             .:|.:::.:..:      .|:..|.:....|.|:|: .|.|:|::|
Zfish   462 LCCKGF-------------CIDILKKLSRNI------KFSYDLYLVTNGKHGKLV-RGIWNGMIG 506

  Fly   298 QVTSREADFAVCPIRFVLDRQPYVQYSAVLHTQNIHFLFRHPRRSHIKNIFFEPLSNQVW--WCV 360
            :|..:.||.|:..:....:|...:.:|.......|..:......:...:.|.||.|..||  ..|
Zfish   507 EVFYKRADMAIGSLTINEERSEIIDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFV 571

  Fly   361 LALVTGSTILLLFH----VRLERMLSNMEN----RFSF---VWFTMLETYLQQGPANEIFRLFST 414
            :.|...:..:.:|.    |...|.|.:.::    .|:.   ||......:....|. |..:..::
Zfish   572 MCLTVVAVTVFVFEYCSPVGYNRSLVSAKDPGGPTFTIGKSVWLLWGIVFNNSVPI-ENPKGTTS 635

  Fly   415 RLLISLSCIFSFMLMQFYGAFIVGSLLSESARSIVNLQALYDSNLAIGMENI-SYNFPIFTNTSN 478
            ::::.:...|:.:.:..|.|.:...::.|  :.|..:..|.|.......:.. .:.|....|.|.
Zfish   636 KIMVLVWAFFAVIFLASYTANLAAFMIQE--QYIDTVSGLSDKKFQKPQDQYPPFRFGTVPNGST 698

  Fly   479 QL-VRDVYVKKICKSGEHNIMSLQQGAERIIQGR---FAFHTAIDRMYRLLLELQMDEAEFCDL- 538
            :. :|..|.:......::|...::.....:..|:   |.:..|:       |.....:.|.|.| 
Zfish   699 ERNIRSNYPEMHSHMVKYNQKGVEDALNSLKTGKLDAFIYDAAV-------LNYMAGKDEGCKLV 756

  Fly   539 ----QEVMFNLPYDSGSVMPKGSPWREHLAHALLHFRATGLLQYNDKKWMVRRPDCSLFKTSQAE 599
                .:|.....|  |..:.|.|.|:..:..|||.|.|.|..|.....|:.     .:.:..:.|
Zfish   757 TIGSGKVFATTGY--GIALQKESRWKRPIDLALLQFLADGDTQKLQTVWLT-----GICRNEKKE 814

  Fly   600 V-----DLEHFAPALFALALAMVASALVFLLELFLHW 631
            |     |:::.|...:.|.:||..|.|||..|..|:|
Zfish   815 VMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLLYW 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir84aNP_649720.2 nt_trans <54..>112 CDD:294020 8/36 (22%)
Periplasmic_Binding_Protein_Type_2 222..583 CDD:304360 73/389 (19%)
Lig_chan 355..602 CDD:278489 49/274 (18%)
grin2caNP_001352716.1 PBP1_iGluR_NMDA_NR2 38..398 CDD:107373 33/191 (17%)
PBP2_iGluR_NMDA_Nr2 409..810 CDD:270436 78/441 (18%)
NMDAR2_C 847..>938 CDD:313729 2/5 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591560
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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