DRSC/TRiP Functional Genomics Resources

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Protein Alignment nxf4 and sbr

DIOPT Version :9

Sequence 1:NP_731156.1 Gene:nxf4 / 40884 FlyBaseID:FBgn0051501 Length:301 Species:Drosophila melanogaster
Sequence 2:NP_524660.1 Gene:sbr / 43944 FlyBaseID:FBgn0003321 Length:672 Species:Drosophila melanogaster


Alignment Length:312 Identity:75/312 - (24%)
Similarity:131/312 - (41%) Gaps:67/312 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KNGARLPRSIYGWYRVL-----IYSTDRRLTFNRVLRRIRCILTPLKINPRYKHTGGEQDTAEDS 90
            |.|..:|.| :|||:|.     ||..:      .:|..:...::|....|:|             
  Fly   102 KFGKLMPNS-FGWYQVTLQNAQIYEKE------TLLSALLAAMSPHVFIPQY------------- 146

  Fly    91 WAL----FTFFVDSYDVASA---LFRRGWVDN--QIWLKVSDRMPKIWINSILRLHLTMVLLDRY 146
            |.:    ..||.|.|:.|..   |.:.|.:.:  ::..:|...:|.:.|:...:..:.:.:..||
  Fly   147 WRVERNCVIFFTDDYEAAERIQHLGKNGHLPDGYRLMPRVRSGIPLVAIDDAFKEKMKVTMAKRY 211

  Fly   147 DPVERSLDLTLFYKDKALCGEFFALAESNCMSTVLGIVDREMPELERLILDGNHLTNLWVFRKVE 211
            :...::|||:.|:.|..|...|..|...|.|...:.|:...:|:||.|.|:.|.::::..|:.||
  Fly   212 NIQTKALDLSRFHADPDLKQVFCPLFRQNVMGAAIDIMCDNIPDLEALNLNDNSISSMEAFKGVE 276

  Fly   212 RRFPRLHSISLKHNDIENIYSLRNLQFLPLAELNLLDNPLPAGYE------KEVLDIWPSLQVLN 270
            :|.|.|..:.|..|.|.::..|..|:.|.:.||.|.:||..:.|:      .||...:|.|..|:
  Fly   277 KRLPNLKILYLGDNKIPSLAHLVVLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKLD 341

  Fly   271 KIQVTP---------------------DPAMMQLVERVLQHTGTKREFFRFF 301
            ...:.|                     |.|..::|.:.|.      ::||.|
  Fly   342 GETLEPQITFDLSEQGRLLETKASYLCDVAGAEVVRQFLD------QYFRIF 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nxf4NP_731156.1 leucine-rich repeat 150..190 CDD:275382 11/39 (28%)
LRR_4 189..235 CDD:289563 16/45 (36%)
leucine-rich repeat 191..216 CDD:275382 9/24 (38%)
leucine-rich repeat 217..240 CDD:275382 6/22 (27%)
sbrNP_524660.1 Tap-RNA_bind 112..191 CDD:286271 19/97 (20%)
leucine-rich repeat 215..255 CDD:275382 11/39 (28%)
LRR_RI <223..341 CDD:238064 36/117 (31%)
LRR_8 256..315 CDD:290566 20/58 (34%)
LRR_4 256..298 CDD:289563 14/41 (34%)
leucine-rich repeat 256..281 CDD:275382 9/24 (38%)
leucine-rich repeat 282..305 CDD:275382 6/22 (27%)
leucine-rich repeat 306..336 CDD:275382 8/29 (28%)
NTF2 372..531 CDD:238403 5/22 (23%)
Big_3_5 <578..>614 CDD:293246
TAP_C 609..671 CDD:197882
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450007
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3763
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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