DRSC/TRiP Functional Genomics Resources

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Protein Alignment nxf4 and Nxf3

DIOPT Version :10

Sequence 1:NP_731156.1 Gene:nxf4 / 40884 FlyBaseID:FBgn0051501 Length:301 Species:Drosophila melanogaster
Sequence 2:XP_008771632.1 Gene:Nxf3 / 302591 RGDID:1564923 Length:571 Species:Rattus norvegicus


Alignment Length:337 Identity:67/337 - (19%)
Similarity:120/337 - (35%) Gaps:105/337 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TPRNNSSEGPLCHSTPRSVKGDFKFESKN-----GARLPR----------SIYGWYRVLI---YS 50
            |.|..:..|.|.|....::   .|::..|     ||:.|.          :...|::|.|   ..
  Rat    56 TRRRYTPYGILSHHQRINL---HKWDQMNVNMEEGAKPPERKMERDKQDDTSENWFKVTIPFGIK 117

  Fly    51 TDRRLTFNRVLRRIRCILTPLKINPRYKHTGGEQDTAEDSWALFTFFVDSYDVASALFR-----R 110
            .|::...|.:..:.....||::.:  |:....            |||||..::|..|..     |
  Rat   118 YDKKWMLNLIQSQCSIPFTPVQFH--YEKMQA------------TFFVDDPNIAFMLKAISDKIR 168

  Fly   111 GWVDNQIWLKVSDRMPKIWINSILRL--------HLTMVLLDRYDPVERSL---------DLTLF 158
            ...||:|.:.:|   |....:|:..|        .|||  ..:.|..:|.|         |||.:
  Rat   169 DETDNKISIFIS---PCDEPHSVTELKSEKMDQKKLTM--NQQCDTSQRILNRQRLSFDQDLTTY 228

  Fly   159 YKDKALCGEFFALAESNCMSTVLGIVDREMPELERLILDGNHLTNLWVFRKVERRFPRLHSISLK 223
            ..|       ..|:....|:..|.|.:.::.:...   :|          |:.:.         :
  Rat   229 PTD-------LVLSPRRYMTPSLNISEEDVTQANS---EG----------KMAKE---------Q 264

  Fly   224 HNDIENIYSLRNLQFLPLAELNLLDNPLP--AGYEKEVLDIWPSLQVLNKIQVTPDPAMMQLVER 286
            .:|||.|.:::          :.|...:|  :.....:|:::|.|..|:. |.:..||:....::
  Rat   265 ASDIEEICAVK----------SSLSTTMPDKSSNINSILELFPKLLSLDG-QESCKPALCGPEDQ 318

  Fly   287 VLQHTGTKREFF 298
            ....| .||.||
  Rat   319 KTIST-YKRSFF 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nxf4NP_731156.1 leucine-rich repeat 150..190 CDD:275382 10/48 (21%)
PPP1R42 <191..276 CDD:455733 13/86 (15%)
leucine-rich repeat 191..216 CDD:275382 2/24 (8%)
leucine-rich repeat 217..240 CDD:275382 4/22 (18%)
Nxf3XP_008771632.1 Tap-RNA_bind 107..186 CDD:462696 21/95 (22%)
leucine-rich repeat 211..250 CDD:275382 10/45 (22%)
leucine-rich repeat 269..298 CDD:275382 5/38 (13%)
NTF2_like 333..488 CDD:471850
TAP_C 503..563 CDD:197882
Blue background indicates that the domain is not in the aligned region.

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