DRSC/TRiP Functional Genomics Resources

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Protein Alignment rn and znf384b

DIOPT Version :9

Sequence 1:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster
Sequence 2:XP_009290524.1 Gene:znf384b / 568558 ZFINID:ZDB-GENE-030131-2855 Length:523 Species:Danio rerio


Alignment Length:622 Identity:171/622 - (27%)
Similarity:235/622 - (37%) Gaps:208/622 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 PPIKIEQVFGEPSSLGAVVEDYALGLDCPVEHTFRKPHNNNGYSWSTGNNNEVVSHSSNGHTNNH 187
            ||..:..|.|.|             ::.|...|.::.|....:|          |||.       
Zfish    60 PPTAVVAVAGGP-------------MEAPTSRTLKQEHVQPSHS----------SHSI------- 94

  Fly   188 PTTPPTPPNEASATQATSVSAINLNQAQPASQTRSNFGSSIKSPPSEPDAVTAATCKSQENNSGQ 252
             |..|.||: ...|.|..|:.::     |.|..:|..       |..|..:|..|.|..:     
Zfish    95 -TVVPVPPS-GIMTAAGLVTLVS-----PVSSAQSLI-------PGHPSMITVQTDKKND----- 140

  Fly   253 NPTPNSLSDHNPAHNLNSNSTAAAVAAAAAAAAAANMPIGGVQGQNPTQGLVHWMSAVMAEHMTG 317
                          :|..:.....:.:.........:|:.|                       .
Zfish   141 --------------SLPCSPVIIPLPSKRCRKKKETLPLVG-----------------------S 168

  Fly   318 QTHHDPGAVGMHYMWNGNVDHAKDISDYNLWPPTPRSHQHASEHHPMSLKQEYEAKMNDHHHNNL 382
            .|..||..:|:                         |.||.|. ||.||..|             
Zfish   169 PTGTDPLILGL-------------------------SGQHLST-HPYSLSPE------------- 194

  Fly   383 QKGHFLDDNRLEHHAVTGQGGLGLGASNGVGGGGG--------GASVVGNSSLGA-SSHHAVAAA 438
             :||                         .|..|.        |.:....|.:.. |..|....|
Zfish   195 -EGH-------------------------AGKEGSKTYRCRMCGLTFCSKSDMQLHSKSHTEVKA 233

  Fly   439 H---HHNQAVAAASAAALLVVPQPINASKMGGPGGVSSVAGGHATGGGSGRKYQCKMCPQIFSSK 500
            |   |.:::.|..|..|                        .|.......:.|.|..|.:.|...
Zfish   234 HQCPHCSKSFANTSYLA------------------------QHIRIHSGAKPYTCSYCQKAFRQL 274

  Fly   501 ADLQLHTQIHMREAKPYKCTQCSKAFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIR 565
            :.||.||:.| .|:||:||..|:|:|||||||:||.|||.|:|||.|..|::.|.||||||||.|
Zfish   275 SHLQQHTRNH-TESKPHKCPHCTKSFANSSYLAQHVRIHTGVKPYTCSYCEKTFRQLSHLQQHHR 338

  Fly   566 THTGDKPYKCRHPGCQKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFSDEPSLLEHIPKHKESKH 630
            .||||:||||.|.||:|:|:||||||||.|.|..|||:||:.|.:.:.|...|..|:..| ..||
Zfish   339 IHTGDRPYKCTHMGCEKSFTQLSNLQSHRRQHNKDKPYKCHHCNRGYVDAAGLDIHLSTH-TVKH 402

  Fly   631 LKTHICQYCGKSYTQETYLTKHMQKHAERTDKRP---PIVPGSAAAIAAAAAAAAGGSANPANGP 692
            .|.:.|..|.::||.||||.|||||||      |   |..|||..  .:.:...||||.:..:| 
Zfish   403 AKLYSCGLCHRTYTSETYLMKHMQKHA------PDMLPSPPGSNQ--HSHSPGRAGGSGSEGDG- 458

  Fly   693 PPPPNPAQHQRNNLGLPPVSI--APSDNGYWPKVSPD 727
                 .::.:|:::.:.|||:  ....|.|.|..:.|
Zfish   459 -----QSRIERSDVFVQPVSVPCVYDMNQYKPVPAAD 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 7/19 (37%)
C2H2 Zn finger 519..539 CDD:275368 13/19 (68%)
zf-H2C2_2 531..556 CDD:290200 14/24 (58%)
zf-C2H2 545..567 CDD:278523 13/21 (62%)
C2H2 Zn finger 547..567 CDD:275368 12/19 (63%)
zf-C2H2_8 550..630 CDD:292531 44/79 (56%)
zf-H2C2_2 559..586 CDD:290200 19/26 (73%)
C2H2 Zn finger 575..597 CDD:275368 15/21 (71%)
C2H2 Zn finger 605..625 CDD:275368 5/19 (26%)
C2H2 Zn finger 636..656 CDD:275368 12/19 (63%)
znf384bXP_009290524.1 C2H2 Zn finger 208..228 CDD:275368 3/19 (16%)
COG5048 <234..383 CDD:227381 79/173 (46%)
C2H2 Zn finger 236..256 CDD:275368 5/43 (12%)
C2H2 Zn finger 264..284 CDD:275368 7/19 (37%)
zf-H2C2_2 276..301 CDD:290200 13/25 (52%)
C2H2 Zn finger 292..312 CDD:275368 13/19 (68%)
zf-H2C2_2 304..329 CDD:290200 14/24 (58%)
C2H2 Zn finger 320..340 CDD:275368 12/19 (63%)
zf-H2C2_2 332..359 CDD:290200 19/26 (73%)
C2H2 Zn finger 348..370 CDD:275368 15/21 (71%)
C2H2 Zn finger 378..398 CDD:275368 5/19 (26%)
C2H2 Zn finger 408..428 CDD:275368 12/19 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 43 1.000 Domainoid score I12363
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D215629at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm26399
orthoMCL 1 0.900 - - OOG6_109421
Panther 1 1.100 - - LDO PTHR23226
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

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