DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rn and idc

DIOPT Version :10

Sequence 1:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_650862.1 Gene:idc / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster


Alignment Length:535 Identity:122/535 - (22%)
Similarity:195/535 - (36%) Gaps:94/535 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 TPPNEASATQATSVSAINLNQAQPASQTRSNF----------------GSSIKSPPSEPDAVT-- 239
            :|...|::||...|..:.|.  ||.....|.|                |..||.....||.:.  
  Fly     9 SPAAAATSTQKWIVCRVCLQ--QPKEPMASIFNDDSEKDLTHMIRECGGVPIKQFDHYPDKICEK 71

  Fly   240 -----------AATCKSQENNSGQNPTPNSLSDHNPAHNLNSNSTAAAVAAAAAAAAAANMPIGG 293
                       ..||:....:..|...|..:....|  ....:.||..:........|...|...
  Fly    72 CFKVLKMAFKFRETCQRSYGHLRQFVGPVEVEQRPP--EKKGSETATKLEPDVDPDEAEQEPEHD 134

  Fly   294 VQGQNPTQGLVHWMSAVMAEHMTGQTHHDPGAVGM---------------HYMWNGNVDHAKDIS 343
            .:.::......|:..|..|....|...||....|:               ....:|.::...|:.
  Fly   135 EEDEDVDLDESHYAEADDAAETQGGVFHDEIEDGILVELEKDRIVHVKNEQVEEDGIIEEVYDVY 199

  Fly   344 DY---NLWPPTPRSHQHASEH-HPMSLKQEYEAKMNDHHHNNLQKGHFLDDNRLEHHAVTGQGGL 404
            :.   :|.|.....|:.|.:. ..:|.:.||   ::...|:.|.:....||..::.::...:   
  Fly   200 ETYEGDLIPDQGYDHEMADQALSELSAEIEY---LDQVEHDQLTESAHEDDAEVDLNSTEEE--- 258

  Fly   405 GLGASNGVGGGGGGASVVGNSSLGASSHHAVAAAHHHNQAVAAASAAALLVVPQPINASKMGGPG 469
                            .|.:.|:.||.|...|.....|...:|.|.|::.|.......:..|.| 
  Fly   259 ----------------FVPSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKTTDRGNP- 306

  Fly   470 GVSSVAGGHATGGGSGRKYQCKMCPQIFSSKADLQLHT--------QIHMREAKPYK--CTQCSK 524
              ..|..|::...||  |...|....|...:...:.|:        :|.:.:.|.:|  |..|..
  Fly   307 --LKVRRGNSDSAGS--KMSIKSEKDISIGEVLARKHSGIKTKGGHKILLGDKKEFKYICDVCGN 367

  Fly   525 AFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHPGCQKAFSQLSN 589
            .:.:.|.|::|.::|.|:||:.||||...|.|...|.:|:.||||::||||.:  |..||:.||.
  Fly   368 MYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTHTGNRPYKCSY--CPAAFADLST 430

  Fly   590 LQSHSRCHQTDKPFKCNSCYKCFSDEPSLLEHIPKHKESKHLKTHICQYCGKSYTQETYLTKHMQ 654
            ...|.|.|..::|::|:.|:|.|:...:|..|...|...   |.|:|..|||.:.|...|..|..
  Fly   431 RNKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGE---KPHVCDVCGKGFPQAYKLRNHRV 492

  Fly   655 KHAERTDKRPPIVPG 669
            .|..|.......|.|
  Fly   493 IHERRGQSARESVAG 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 3/27 (11%)
C2H2 Zn finger 519..539 CDD:275368 5/19 (26%)
COG5048 543..>647 CDD:227381 41/103 (40%)
C2H2 Zn finger 547..567 CDD:275368 8/19 (42%)
zf-H2C2_2 559..586 CDD:463886 13/26 (50%)
C2H2 Zn finger 575..597 CDD:275368 8/21 (38%)
C2H2 Zn finger 605..625 CDD:275368 6/19 (32%)
C2H2 Zn finger 636..656 CDD:275368 7/19 (37%)
idcNP_650862.1 zf-AD 22..95 CDD:214871 13/74 (18%)
C2H2 Zn finger 362..382 CDD:275368 5/19 (26%)
COG5048 386..>447 CDD:227381 27/62 (44%)
C2H2 Zn finger 390..410 CDD:275368 8/19 (42%)
C2H2 Zn finger 418..438 CDD:275368 8/21 (38%)
SFP1 <424..491 CDD:227516 23/69 (33%)
C2H2 Zn finger 446..466 CDD:275368 6/19 (32%)
C2H2 Zn finger 474..494 CDD:275368 7/19 (37%)

Return to query results.
Submit another query.