DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rn and znf384a

DIOPT Version :9

Sequence 1:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster
Sequence 2:XP_005159474.1 Gene:znf384a / 368610 ZFINID:ZDB-GENE-030616-498 Length:596 Species:Danio rerio


Alignment Length:626 Identity:178/626 - (28%)
Similarity:229/626 - (36%) Gaps:258/626 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 YMWN------GNVDHAKDISDY--NLWPPTPRSHQHAS-EHHPMSLKQEYEAKMNDHHHNNLQKG 385
            |.|:      |.:|:|..:|..  .|.|....|..|:| .|:|.::.                  
Zfish    10 YFWSPVPTVQGQIDNAMFLSKMKEQLGPDKAGSFPHSSAAHYPTAVL------------------ 56

  Fly   386 HFLDDNRLEHHAVTGQGGLGLGA-------SNGVGGGGGGASVVGNSSLGASSHHAVAAAH--HH 441
                       .|.|...:..||       .:|.||||||....|....|..:|     .|  |.
Zfish    57 -----------TVPGSVAMDTGAVGRVPKQESGGGGGGGGGGSAGAQMTGVGAH-----LHPPHT 105

  Fly   442 NQAVAAA--------SAAALLVVPQ----------------------------PINA-------- 462
            :|.:...        :||.|::.||                            |.|.        
Zfish   106 SQNITVVPVPSTGIMTAAGLVITPQGTLVSPPASSQSFVSGPPTTTMIVSALHPSNTEAVRPPSL 170

  Fly   463 ----------------------SKMG----------GPGGVSSVAGG-------HATGGG----- 483
                                  ||.|          ||....::|.|       |...||     
Zfish   171 YLHSHYKKEDGSIPPAVVMPIPSKRGRKKKSMMPRAGPVSAHALASGSDALILAHLAAGGQHNTN 235

  Fly   484 ----------------SGRKYQCKMCPQIFSSKADLQLHTQIHMR-------------------- 512
                            ..:.|:|:||...|.||:|:|:|.:.|..                    
Zfish   236 DPYDLSNDEDEHQGKDGNKSYRCRMCAVTFFSKSDMQIHAKSHTEAKPHKCPHCSKSFANSSYLA 300

  Fly   513 -----------------------------------EAKPYKCTQCSKAFANSSYLSQHTRIHLGI 542
                                               |.||:||..|||:|||||||:||.|||.|.
Zfish   301 QHIRIHSGAKPYTCSYCQKTFRQLSHLQQHTRNHTEGKPHKCPHCSKSFANSSYLAQHIRIHSGA 365

  Fly   543 KPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHPGCQKAFSQLSNLQSHSRCHQTDKPFKCNS 607
            |||.|..||:.|.||||||||.|.||||:||||.||||:|||:||||||||.|.|..|||:||::
Zfish   366 KPYTCSYCQKTFRQLSHLQQHNRIHTGDRPYKCVHPGCEKAFTQLSNLQSHRRQHNKDKPYKCHN 430

  Fly   608 CYKCFSDEPSLLEHIPKHKESKHLKTHICQYCGKSYTQETYLTKHMQKH-----------AERTD 661
            |.:.::|..||..|:..| ..||.|.:.|..|.:|||.||||.||||||           |.:..
Zfish   431 CNRGYTDATSLEVHLTTH-TVKHAKLYSCGLCNRSYTSETYLMKHMQKHNPDPLTVAAAVAAQQA 494

  Fly   662 KRPPIVPGS----------AAAIAAAAAAAAGGSANPANGPPPP---------PNPAQ-HQRNNL 706
            :.|....|.          .||.||||||||...|...|.|.||         |.|.. ||..  
Zfish   495 QNPGQGSGGGSGRGRGRGRGAAAAAAAAAAAAAQAQNQNNPTPPTSYSVSDGIPCPFDLHQYK-- 557

  Fly   707 GLPPVSIAPSDNGYWPKVSPDSAA--------AANAMEVMH 739
                 :::..:..|.|....|..|        :.:|::|.|
Zfish   558 -----TVSAGEIQYKPVTVADLTAHKDLCLTVSTSAIQVEH 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 9/19 (47%)
C2H2 Zn finger 519..539 CDD:275368 14/19 (74%)
zf-H2C2_2 531..556 CDD:290200 15/24 (63%)
zf-C2H2 545..567 CDD:278523 14/21 (67%)
C2H2 Zn finger 547..567 CDD:275368 13/19 (68%)
zf-C2H2_8 550..630 CDD:292531 48/79 (61%)
zf-H2C2_2 559..586 CDD:290200 21/26 (81%)
C2H2 Zn finger 575..597 CDD:275368 17/21 (81%)
C2H2 Zn finger 605..625 CDD:275368 6/19 (32%)
C2H2 Zn finger 636..656 CDD:275368 13/19 (68%)
znf384aXP_005159474.1 C2H2 Zn finger 258..278 CDD:275368 9/19 (47%)
zf-H2C2_2 270..295 CDD:290200 4/24 (17%)
zf-C2H2_8 283..363 CDD:292531 19/79 (24%)
zf-C2H2 284..306 CDD:278523 0/21 (0%)
C2H2 Zn finger 286..306 CDD:275368 0/19 (0%)
COG5048 <310..478 CDD:227381 89/168 (53%)
zf-C2H2 312..334 CDD:278523 0/21 (0%)
C2H2 Zn finger 314..334 CDD:275368 0/19 (0%)
zf-H2C2_2 326..351 CDD:290200 9/24 (38%)
C2H2 Zn finger 342..362 CDD:275368 14/19 (74%)
zf-H2C2_2 354..379 CDD:290200 15/24 (63%)
C2H2 Zn finger 370..390 CDD:275368 13/19 (68%)
zf-H2C2_2 382..409 CDD:290200 21/26 (81%)
C2H2 Zn finger 398..420 CDD:275368 17/21 (81%)
C2H2 Zn finger 428..448 CDD:275368 6/19 (32%)
C2H2 Zn finger 458..478 CDD:275368 13/19 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 43 1.000 Domainoid score I12363
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm26399
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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