DRSC/TRiP Functional Genomics Resources

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Protein Alignment rn and Zfp422

DIOPT Version :10

Sequence 1:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_001012763.1 Gene:Zfp422 / 360389 RGDID:620229 Length:237 Species:Rattus norvegicus


Alignment Length:203 Identity:77/203 - (37%)
Similarity:109/203 - (53%) Gaps:19/203 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   464 KMGGP-GGVSSVAGGHATGGGSGRKYQCKMCPQIFSSK------ADLQLHTQIHMREAKPYKCTQ 521
            ::|.| ||:|..|       ..|:.|:.|........|      .|..|..:....:.||||||:
  Rat     2 RLGKPKGGISRSA-------SQGKTYESKRKTARQRQKWGVAIRFDSGLSRRRRNVDEKPYKCTK 59

  Fly   522 CSKAFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHPGCQKAFSQ 586
            |||:|:.||.|.||.:||.|.|.::|..|.:.|.|.|:|.||.|.|||:|||||..  |.:.|.|
  Rat    60 CSKSFSQSSTLFQHKKIHTGKKSHKCADCGKSFFQSSNLIQHRRIHTGEKPYKCDE--CGERFKQ 122

  Fly   587 LSNLQSHSRCHQTDKPFKCNSCYKCFSDEPSLLEHIPKHKESKHLKTHICQYCGKSYTQETYLTK 651
            .|||..|.|.|..:||:.|:.|.:|||....|::|...|...   |.:.|:.|.|.::|.::|.:
  Rat   123 SSNLIQHQRIHTGEKPYCCDECGRCFSQSSHLIQHQRTHTGE---KPYQCEECDKCFSQSSHLRQ 184

  Fly   652 HMQKHAER 659
            ||:.|.|:
  Rat   185 HMKVHKEK 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 4/25 (16%)
C2H2 Zn finger 519..539 CDD:275368 11/19 (58%)
COG5048 543..>647 CDD:227381 42/103 (41%)
C2H2 Zn finger 547..567 CDD:275368 9/19 (47%)
zf-H2C2_2 559..586 CDD:463886 14/26 (54%)
C2H2 Zn finger 575..597 CDD:275368 9/21 (43%)
C2H2 Zn finger 605..625 CDD:275368 7/19 (37%)
C2H2 Zn finger 636..656 CDD:275368 7/19 (37%)
Zfp422NP_001012763.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 9/37 (24%)
COG5048 <53..192 CDD:227381 64/143 (45%)
C2H2 Zn finger 57..77 CDD:275368 11/19 (58%)
C2H2 Zn finger 85..105 CDD:275368 9/19 (47%)
C2H2 Zn finger 113..133 CDD:275368 9/21 (43%)
C2H2 Zn finger 141..161 CDD:275368 7/19 (37%)
C2H2 Zn finger 169..189 CDD:275368 7/19 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 188..218 2/5 (40%)

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