Protein Alignment rn and CG42726

DIOPT Version :10

• Sequence 1: NP_001262343.1
• Gene: rn / 40879
• FlyBaseID: FBgn0267337
• Length: 952
• Species: Drosophila melanogaster
• Sequence 2: NP_732017.3
• Gene: CG42726 / 318709
• FlyBaseID: FBgn0261679
• Length: 441
• Species: Drosophila melanogaster
• Alignment Length: 375
• Identity: 87/375 - (23%)
• Similarity: 144/375 - (38%)
• Gaps: 69/375 - (18%)

  Fly   488 YQCKMCPQIFSSKADLQLHTQIHMREAKPYKCTQCSKAFANSSYLSQHTRIHLGIKPYRCEICQR 552
            |.|.:|.:.|.|:.....|........|.:.|.:|.:.||.||:|..|...|.....:.|.:|.:
  Fly    72 YHCTVCNKDFRSRTQQYYHLTCGNDLLKKFNCKECGRRFATSSHLKYHLMSHEKQSKHSCSVCHK 136

  Fly   553 KFTQLSHLQQHIRTHTGDKPYKCRHPGCQKAFSQLSNLQSHSRCH-QTDKPFKCNSCYKCFSDEP 616
            .|.|...||:|:.||..:| :.|  |.|||.|.:.|:|.||...| .....|||..|.|.|.::.
  Fly   137 SFKQPIVLQRHMLTHNQEK-HLC--PICQKVFRRKSSLASHLAIHSDLGLQFKCELCSKHFQNKA 198

  Fly   617 SLLEHIPKHKESKHLKTHICQYCGKSYTQETYLTKHMQKHAERTDKRPPIVPGSAAAIAAAAAAA 681
            :|.:|:.||  .|:...|:|:.|.||:.::|.|..||::|:.|..:               :.:.
  Fly   199 NLNQHLRKH--DKNNIRHMCKVCQKSFLRQTTLRLHMKRHSNRERQ---------------SCSL 246

  Fly   682 AGGSANPANGPPPPPNPAQHQRNNLGLP-------PVSIAPSDN--GYWPKVSPDSAAAANAMEV 737
            .|.|.|      .|....:|.|.:....       .::|...||  .:...:.|..|.|:....|
  Fly   247 CGKSYN------DPDALGRHLRQHKTAERYRCIQCDITINRKDNMLRHLRSMHPGCAFASTVEMV 305

  Fly   738 MHQQQQQQQQQQQQQQQQ--------------------------------QQQQQQQAHHHHPQH 770
            ..:...|:....:::..|                                |.::.:....|.|..
  Fly   306 TPRSSAQEATTAEERPSQTVRYNSVIQSVGNVEPVMLLQSTPLPSQLPELQMEKGKAVPEHLPLP 370

  Fly   771 GVPPQQHVPPQQQQQQQQQQQHHHPQQQPPPQHSMEAHYAQPTAPNGSQS 820
            .|.|:::|...::.......:.:..:..|..|.....|: ||..|....|
  Fly   371 DVMPEENVQLYRKIILDLDNEEYSSEPSPDAQEPAMQHH-QPRVPGQGSS 419

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rn	NP_001262343.1	C2H2 Zn finger	490..510	CDD:275368	5/19 (26%)
		C2H2 Zn finger	519..539	CDD:275368	8/19 (42%)
		COG5048	543..>647	CDD:227381	37/104 (36%)
		C2H2 Zn finger	547..567	CDD:275368	7/19 (37%)
		zf-H2C2_2	559..586	CDD:463886	12/26 (46%)
		C2H2 Zn finger	575..597	CDD:275368	10/21 (48%)
		C2H2 Zn finger	605..625	CDD:275368	6/19 (32%)
		C2H2 Zn finger	636..656	CDD:275368	8/19 (42%)
CG42726	NP_732017.3	C2H2 Zn finger	74..94	CDD:275368	5/19 (26%)
		C2H2 Zn finger	103..123	CDD:275368	8/19 (42%)
		COG5048	<112..288	CDD:227381	57/201 (28%)
		C2H2 Zn finger	131..151	CDD:275368	7/19 (37%)
		C2H2 Zn finger	158..178	CDD:275368	10/21 (48%)
		C2H2 Zn finger	187..207	CDD:275368	6/19 (32%)
		C2H2 Zn finger	216..236	CDD:275368	8/19 (42%)
		C2H2 Zn finger	244..264	CDD:275368	6/25 (24%)
		C2H2 Zn finger	272..290	CDD:275368	3/17 (18%)