DRSC/TRiP Functional Genomics Resources

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Protein Alignment rn and Zscan22

DIOPT Version :9

Sequence 1:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_001001447.1 Gene:Zscan22 / 232878 MGIID:2443312 Length:496 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368
C2H2 Zn finger 519..539 CDD:275368
zf-H2C2_2 531..556 CDD:290200
zf-C2H2 545..567 CDD:278523
C2H2 Zn finger 547..567 CDD:275368
zf-C2H2_8 550..630 CDD:292531
zf-H2C2_2 559..586 CDD:290200
C2H2 Zn finger 575..597 CDD:275368
C2H2 Zn finger 605..625 CDD:275368
C2H2 Zn finger 636..656 CDD:275368
Zscan22NP_001001447.1 SCAN 45..129 CDD:366881
COG5048 <181..479 CDD:227381
C2H2 Zn finger 273..292 CDD:275368
C2H2 Zn finger 300..320 CDD:275368
C2H2 Zn finger 328..348 CDD:275368
C2H2 Zn finger 356..376 CDD:275368
C2H2 Zn finger 384..404 CDD:275368
C2H2 Zn finger 412..432 CDD:275368
C2H2 Zn finger 440..460 CDD:275368
C2H2 Zn finger 468..488 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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