DRSC/TRiP Functional Genomics Resources

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Protein Alignment rn and lin-29

DIOPT Version :9

Sequence 1:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_496545.1 Gene:lin-29 / 174830 WormBaseID:WBGene00003015 Length:459 Species:Caenorhabditis elegans


Alignment Length:520 Identity:198/520 - (38%)
Similarity:241/520 - (46%) Gaps:129/520 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   399 TGQGG---LGLGASNGVGGGGGGASVVGNSSL-GASS------------HHAVA------AAHHH 441
            ||.|.   .|:|.:..|.......|..|..|. ||:|            ||::.      :.|..
 Worm    23 TGSGSTTHFGVGTNFKVSVRSSSRSTDGTDSTDGANSDNVTGSTGSTPAHHSITNLNMALSQHSI 87

  Fly   442 NQAVAAASA--------AALLVVPQPINASKMGGPGGVSSVAGGHATGGGSGRKYQCKMCPQIFS 498
            :.|.||:|.        |.||...|             :|:...|...       |....|| |.
 Worm    88 DSATAASSTNPFPHFNQADLLNFHQ-------------NSLLPHHMFS-------QFGRYPQ-FE 131

  Fly   499 SKADL-QLHTQIHMREAKPYKCTQCSKAFANSSYLSQHTRIHLGIKPY-RCEICQRKFTQLSHLQ 561
            .|.|: .|..|:.||||||||||||.||||||||||||.||||||||: .|..|.:|||||||||
 Worm   132 QKPDVGVLQQQMQMREAKPYKCTQCVKAFANSSYLSQHMRIHLGIKPFGPCNYCGKKFTQLSHLQ 196

  Fly   562 QHIRTHTGDKPYKCRHPGCQKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFSDEPSLLEHIPKHK 626
            ||||||||:|||||:..||.|||||||||||||||||||||||||||||||:||.|||:||||||
 Worm   197 QHIRTHTGEKPYKCKFTGCDKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFTDEQSLLDHIPKHK 261

  Fly   627 ESKHLKTHICQYCGKSYTQETYLTKHMQKHAERTDKRPPIVPGSAAAIAAAAAAAAGGSANPANG 691
            ||||||.|||.:|||||||:|||.|||.|||:|                 :.|:..|....||: 
 Worm   262 ESKHLKIHICPFCGKSYTQQTYLQKHMTKHADR-----------------SKASNFGNDVVPAD- 308

  Fly   692 PPPPP----NPAQHQRNNLGLPPVSIAPSDNGYWPKVSPDSAAAANAMEVMHQQQQQQQQQQQQQ 752
            |..|.    ||.|...:|         ..|:..:...|.....|||.|............|....
 Worm   309 PFDPSLLSWNPMQGMGDN---------AHDSSSFNISSLTDQFAANTMIGSQSTNYNPAFQNSAF 364

  Fly   753 QQQQQQQQQQAHHHHP---QHG--VPPQQHVPPQQQQQQQQQQQHHHPQQQPPPQHSMEAHYAQP 812
            .|....:..:....:|   ::|  .|....:.|.:..|:.                         
 Worm   365 SQLFNIRNNRYLSEYPTSTKNGERAPGFNMITPLENIQRY------------------------- 404

  Fly   813 TAPNGSQSNGHGAELQPHHRMPDPVREDIASTPSAVGPYDAASITKTTSNSAFTP---INSMPPH 874
               |||.|:...........:       ::||||:.....|.|  .::....|.|   ||:|..|
 Worm   405 ---NGSSSSATAVVTATGSAV-------VSSTPSSTSSSSAGS--SSSQGGVFNPQSLINNMKNH 457

  Fly   875  874
             Worm   458  457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 7/20 (35%)
C2H2 Zn finger 519..539 CDD:275368 17/19 (89%)
zf-H2C2_2 531..556 CDD:290200 17/25 (68%)
zf-C2H2 545..567 CDD:278523 15/22 (68%)
C2H2 Zn finger 547..567 CDD:275368 15/19 (79%)
zf-C2H2_8 550..630 CDD:292531 69/79 (87%)
zf-H2C2_2 559..586 CDD:290200 21/26 (81%)
C2H2 Zn finger 575..597 CDD:275368 17/21 (81%)
C2H2 Zn finger 605..625 CDD:275368 16/19 (84%)
C2H2 Zn finger 636..656 CDD:275368 14/19 (74%)
lin-29NP_496545.1 zf-C2H2 151..173 CDD:278523 19/21 (90%)
C2H2 Zn finger 153..173 CDD:275368 17/19 (89%)
zf-H2C2_2 165..191 CDD:290200 17/25 (68%)
zf-C2H2_8 181..265 CDD:292531 70/83 (84%)
C2H2 Zn finger 182..202 CDD:275368 15/19 (79%)
zf-C2H2 182..202 CDD:278523 15/19 (79%)
zf-H2C2_2 194..221 CDD:290200 21/26 (81%)
C2H2 Zn finger 210..232 CDD:275368 17/21 (81%)
zf-H2C2_2 224..248 CDD:290200 23/23 (100%)
C2H2 Zn finger 240..269 CDD:275368 25/28 (89%)
zf-C2H2 269..291 CDD:278523 16/21 (76%)
C2H2 Zn finger 271..291 CDD:275368 14/19 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 83 1.000 Domainoid score I5338
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003260
OrthoInspector 1 1.000 - - oto18030
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3082
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.940

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