DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt4 and Syt14

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_008768117.1 Gene:Syt14 / 684293 RGDID:1592654 Length:859 Species:Rattus norvegicus


Alignment Length:444 Identity:104/444 - (23%)
Similarity:172/444 - (38%) Gaps:98/444 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 PMQDQSTSPIAQPNVKYSEEGDGPAQHAEQQNG-----NQLTVVDGNGLK-HSLHNSLHHSPVET 150
            |.||.|.||  ..:...||.||...:.:...|.     |:.......|.: .|.||..:...|. 
  Rat   452 PYQDDSGSP--HLSCTPSEIGDAKCEISHCSNSPRCSFNKCPSEGSTGHEAESYHNKGYEDDVP- 513

  Fly   151 IANGSVTITLDDHSLTNGKELTVTDQY-----GKLGTIYFKLRYLAERNALMVSIIRCRGLPCKG 210
             ::.:..::.:|.| ..|....:...:     .|.||:.....|.:||..|:|::          
  Rat   514 -SDSTAVLSPEDMS-AQGSASQLPKPFDPEPEAKYGTLDVTFDYDSERQKLLVTV---------- 566

  Fly   211 GSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQHKVKTRVVRNTRNPVYDEDFTFYGLNMNDLQN 275
              :...||||  ..|| ......|.|.|||.|:.:.||.:.|.. .||:.|.|.|..:....:.|
  Rat   567 --TAVTDIPT--YNRT-GGNSWQVHLVLLPIKKQRAKTSIQRGP-CPVFTETFKFNHVESEMIGN 625

  Fly   276 MSLHFVILSFDRYSRDDVIGEVVCPLTSIEI------------------------------GDIS 310
            .::.|.:....|..::.::||.:..||.:.:                              ||.:
  Rat   626 YAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNPSGCDSQVSLSEVSCGDST 690

  Fly   311 KEALSISKEIQPRSLKIRAQGRGELLISLCWQPAAGRLTVVLLKARNLPRM-------------- 361
            ....|:.....|           |:||.|.:....|||:..::|..:...:              
  Rat   691 SSCQSLEHGSVP-----------EILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNGLFCCLK 744

  Fly   362 -----DVTGLADPYVKIYLLYN-GQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVS 420
                 .|..:.|.|||:.||.: ||.::|.||..::...:||:.|:|.|.:     |...|..|:
  Rat   745 HLIGGQVYIIRDTYVKLTLLNSMGQEMSKCKTSTRRGQPNPVYKETFVFQV-----ALFQLSDVT 804

  Fly   421 LELMLLDWDRVTKNEVIGRLELGGPNSSSTALNHWNEVCNSPRRQIAEWHKLNE 474
            |.|.:.:...:.:.|:||.:.||..:|....|.||:.:..|..:|:..||.|.|
  Rat   805 LILSVYNKRSMKRKEMIGWISLGLNSSGEEELRHWSAMKESKGQQVCRWHALLE 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 38/172 (22%)
C2B_Synaptotagmin-4 332..473 CDD:176049 43/160 (27%)
Syt14XP_008768117.1 C2A_Synaptotagmin-14_16 545..668 CDD:176035 35/138 (25%)
C2B_Synaptotagmin-14_16 701..857 CDD:176053 44/171 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.