DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt4 and Syt10

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_113854.1 Gene:Syt10 / 60567 RGDID:62041 Length:523 Species:Rattus norvegicus


Alignment Length:418 Identity:144/418 - (34%)
Similarity:211/418 - (50%) Gaps:72/418 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 QDQSTSPIA-QPNVKYSEEG-DGPAQ-----------HAEQQNGNQLTVVDGNGLKHSLHNSLHH 145
            :::..:|.| :|.:|.|... |.||:           ||..|  .|.|    :....|.|||...
  Rat   118 ENEKPAPKAIEPAIKISHTSPDIPAEVQTALKEHLIKHARVQ--RQTT----DPTSSSRHNSFRR 176

  Fly   146 SPVETIANGSVTITLDDHSLTNGKELTVT---------------------DQYGKLGTIYFKLRY 189
            .....:...||..::....:....|...:                     |.....|.:.|.|:|
  Rat   177 HLPRQMNVSSVDFSMGTEPVLQRGETRTSIGRIKPELYKQKSVDSEGNRKDDVKTCGKLNFALQY 241

  Fly   190 LAERNALMVSIIRCRGLPCKGGSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQHKVKTRVVRNT 254
            ..|...|:|.||:...||.| ..:||              :|||||:.||||::.|.:|||.|.|
  Rat   242 DYENELLVVKIIKALDLPAK-DFTGT--------------SDPYVKIYLLPDRKKKFQTRVHRKT 291

  Fly   255 RNPVYDEDFTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDISKEALSISKE 319
            .||::||.|.| .:..:.|.|..|||.|..|||:||.|:||||:.. ...|:.|:|:|| ::.|:
  Rat   292 LNPLFDELFQF-PVVYDQLSNRKLHFSIYDFDRFSRHDMIGEVILD-NLFEVSDLSREA-TVWKD 353

  Fly   320 IQ---PRSLKIRAQGRGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYVKIYLLYNGQR 381
            |.   ..|:.:     ||::.|||:.|.|||:|:.::|.|||..||:||.:|||||:.|:..|:|
  Rat   354 IHCATTESIDL-----GEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRR 413

  Fly   382 IAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNEVIGRLELGGPN 446
            :.|:||..||.||:||:||:..||||.     .:::.|||.:.::|:|||..|||||.... |.:
  Rat   414 LKKRKTTTKKNTLNPVYNEAIIFDIPP-----ENVDQVSLCIAVMDYDRVGHNEVIGVCRT-GLD 472

  Fly   447 SSSTALNHWNEVCNSPRRQIAEWHKLNE 474
            :.....:||||:....|:.|..||.|.|
  Rat   473 AEGLGRDHWNEMLAYHRKPITHWHPLLE 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 58/145 (40%)
C2B_Synaptotagmin-4 332..473 CDD:176049 62/140 (44%)
Syt10NP_113854.1 Cysteine motif. /evidence=ECO:0000250|UniProtKB:O35681 13..35
C2A_Synaptotagmin-1-5-6-9-10 231..356 CDD:176031 58/142 (41%)
C2B_Synaptotagmin-3-5-6-9-10 365..498 CDD:176048 62/138 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X61
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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