DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt4 and sytl2b

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_701277.6 Gene:sytl2b / 572466 ZFINID:ZDB-GENE-121214-363 Length:1737 Species:Danio rerio


Alignment Length:482 Identity:108/482 - (22%)
Similarity:191/482 - (39%) Gaps:117/482 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LSSVACICARQMRLRNKKQSQHD----------ASFPFQPTRRPTAVRSPSGQPPHYLKKSPSPT 82
            :..::.|..:..:|:......||          .||   .|..|..::..|...|.:|:|...  
Zfish  1315 MEDISSIARQDQKLKQTDDYMHDNYDASSTHLQTSF---STADPEHMKKLSKSVPSFLEKESD-- 1374

  Fly    83 GGKQMGLLSPMQDQSTSPIAQPNVKYSEEGDGPAQHAEQQNGNQLTVVDGNGLKHSLHNSLHHSP 147
            ||         :..|.|         |..|..|     :.|..|.|         :|.|....:.
Zfish  1375 GG---------ESDSES---------SSRGSVP-----KWNNRQFT---------NLSNYSGSTS 1407

  Fly   148 VETIANGSVTITLDDHSLTNGKELTVTDQYGKLGTIYFKLRYLAERNALMVSIIRCRGLPCKGGS 212
            :.:::....::...|::..:.:           |:|.|.|.|:.:.....:.:::|:.|......
Zfish  1408 LSSVSGSVASVYTSDYNSVDVQ-----------GSIQFSLNYVHKLREFHIFVVQCQNLAAVDAK 1461

  Fly   213 SGTGDIPTGMNGRTQAATDPYVKLQLLPDKQH--KVKTRVVRNTRNPVYDEDFTFYGLNMNDLQN 275
                          :..:|||||..|:||..:  |.||.|.:.|.||.|:| ...|.:.|..|.:
Zfish  1462 --------------RNRSDPYVKSYLIPDPANLGKRKTAVKKKTLNPTYNE-ILRYRVRMEYLTS 1511

  Fly   276 MSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDISKEALSI---------SKEIQPRSLKIRAQG 331
            ..|:......|.:.|:..:||:...|::.:..|..::.|.:         :..:||..||    |
Zfish  1512 QVLNLSAWHNDMFGRNSFLGEIELDLSTWDFNDTERKLLPLKPRNLFIQTTNSLQPSDLK----G 1572

  Fly   332 RGELLISLCWQ-------PAAGRLTVVLLKARNLPRMDVTGLADPYVKIYLLYNGQRIAKKKTHV 389
            :..|.|....|       |.:|.:.:.:...:|||.:. :...|||||.::|.:..:.:::||.|
Zfish  1573 QMRLAIRFLPQISHSKNVPGSGEVHIWVKDCKNLPLIR-SPTIDPYVKCFVLPDTSKKSRQKTRV 1636

  Fly   390 KKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNEVIGRLELG----------- 443
            .|||.:|:||.:..:|...||    .|:...:||.:.|.||:..:. :|.|.||           
Zfish  1637 LKRTTNPIFNHTMVYDGFRAE----DLKEACVELTVWDRDRLASHS-LGGLRLGMGTGRSYGVQV 1696

  Fly   444 -GPNSSSTALNHWNEVCNSPRRQIAEW 469
             ..:|::..:..|..:.|||.    ||
Zfish  1697 DWMDSTTEEVALWRRMMNSPN----EW 1719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 35/153 (23%)
C2B_Synaptotagmin-4 332..473 CDD:176049 43/157 (27%)
sytl2bXP_701277.6 PHD_SF 5..>47 CDD:304600
C2 1429..1553 CDD:301316 35/149 (23%)
C2B_SLP_1-2-3-4 1571..1727 CDD:175987 45/163 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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