DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt4 and Syt6

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_006501767.1 Gene:Syt6 / 54524 MGIID:1859544 Length:529 Species:Mus musculus


Alignment Length:493 Identity:163/493 - (33%)
Similarity:241/493 - (48%) Gaps:90/493 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 TAAAVLSSVACICARQMRLRNKKQSQHDASFPF-------QPTRRPTAVRSPSGQPPHYLKKSPS 80
            |:.::|:.|..:|...:          .|.|.|       .|.|:..|....|..|.....:|||
Mouse    56 TSVSLLAVVVIVCGVAL----------VAVFLFLFWKLCWMPWRKKEASSPSSANPASETLQSPS 110

  Fly    81 PTGGKQMGLLSPMQDQSTSPIAQPNVKYSEEG-DGPAQ-----------HAEQQNGNQLTVVDGN 133
            ..|    .:...::|.|.....:..||.|... |.||:           |.:.|   :.|....:
Mouse   111 SRG----NMADKLKDPSALGFLEAAVKISHTSPDIPAEVQMSVKEHIMRHTKLQ---RQTTEPAS 168

  Fly   134 GLKHS-----LHNSLHHSPV------------ETIANGSVTITLDDHSLTNGKELTVTDQYGKLG 181
            ..:|:     |...:|.|.|            :..:.|.:...|......:|.: ..::.....|
Mouse   169 STRHTSFKRHLPRQMHVSSVDYGNELPPAAAEQPTSIGRIKPELYKQKSVDGDD-AKSEAAKSCG 232

  Fly   182 TIYFKLRYLAERNALMVSIIRCRGLPCKG--GSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQH 244
            .|.|.|||..|...|:|.|::...||.|.  |||                 |||||:.||||::.
Mouse   233 KINFSLRYDYESETLIVRILKAFDLPAKDFCGSS-----------------DPYVKIYLLPDRKC 280

  Fly   245 KVKTRVVRNTRNPVYDEDFTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDI 309
            |::|||.|.|.||.:||:|.| .:...:|.:..||..:..|||:||.|:||||:.. ...|..|:
Mouse   281 KLQTRVHRKTLNPTFDENFHF-PVPYEELADRKLHLSVFDFDRFSRHDMIGEVILD-NLFEASDL 343

  Fly   310 SKEALSISKEIQ---PRSLKIRAQGRGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYV 371
            |:|. ||.|:||   ..|:.:     ||::.|||:.|.|||||:.::|.|||..||:||.:||||
Mouse   344 SRET-SIWKDIQYATSESVDL-----GEIMFSLCYLPTAGRLTLTVIKCRNLKAMDITGYSDPYV 402

  Fly   372 KIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNEV 436
            |:.||.:|:|:.||||.:||.||:|::||:..||||.     .:::.|||.:.::|:|||..||:
Mouse   403 KVSLLCDGRRLKKKKTTIKKNTLNPIYNEAIIFDIPP-----ENMDQVSLLISVMDYDRVGHNEI 462

  Fly   437 IGRLELGGPNSSSTALNHWNEVCNSPRRQIAEWHKLNE 474
            ||...: |.|:.....:||||:...||:.||.||.|.|
Mouse   463 IGVCRV-GINAEGLGRDHWNEMLAYPRKPIAHWHSLVE 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 59/147 (40%)
C2B_Synaptotagmin-4 332..473 CDD:176049 66/140 (47%)
Syt6XP_006501767.1 C2A_Synaptotagmin-1-5-6-9-10 231..355 CDD:176031 58/143 (41%)
C2B_Synaptotagmin-3-5-6-9-10 364..497 CDD:176048 66/138 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X61
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.