DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt4 and sytl2

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_012812257.2 Gene:sytl2 / 493264 XenbaseID:XB-GENE-945155 Length:2036 Species:Xenopus tropicalis


Alignment Length:505 Identity:114/505 - (22%)
Similarity:203/505 - (40%) Gaps:108/505 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EEYIPDASVMDTIVP--------AILGLTAAAVLSSVACICARQMRLRNKKQSQHDASFP----- 54
            |...||||..::|.|        .||.....:...::..:..:::.|  :|.:|.|.:.|     
 Frog  1575 ESESPDASKRNSIDPKQGIEESDPILRALKRSSTKTLPPLPVQEVSL--EKSNQDDITVPKEDRD 1637

  Fly    55 --FQPTRRPTAVRSPSG-QPPHYLKKSPSPTGGKQMGLLSPMQDQSTSPIAQPNVKYSEEGDGPA 116
              ::..|....|...|. ..|..||:            ||    ||....      .:::.||..
 Frog  1638 HTYEEVRADKVVPERSHFSDPEKLKR------------LS----QSVPSF------LNDDTDGRE 1680

  Fly   117 QHAEQQNGNQLTVVDGNGLKHSLHNSLHHSPVETIANGSVTITLDDHSLTNGKELTV-TDQYGKL 180
            ..:..::..||              ..|.....::.|.|.:..:...|..:|..::: :..:|.:
 Frog  1681 TDSASESSFQL--------------GRHKKSPSSLTNLSGSSGMASLSSVSGSVMSIYSGDFGNV 1731

  Fly   181 ---GTIYFKLRYLAERNALMVSIIRCRGLPCKGGSSGTGDIPTGMNGRTQAATDPYVKLQLLPD- 241
               |.|.|.|.|........|.:.:|:.|       ...|:       .:..:|||||..|||: 
 Frog  1732 DIKGNIQFALDYADNLQEFQVFVSQCKDL-------AAADV-------KKQRSDPYVKAYLLPEK 1782

  Fly   242 -KQHKVKTRVVRNTRNPVYDEDFTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCPLTSIE 305
             |..|.||.|.:.|.||||: |...|.::.|.|.:.:|:..:...|...|:..:|||...|.|  
 Frog  1783 AKMGKRKTGVKKKTLNPVYN-DVLRYKISKNALLSQTLNLSVWHHDVLGRNSFLGEVDVNLAS-- 1844

  Fly   306 IGDISKEALSISKEIQPR--SLKIRAQGRGELLISLCWQPAA---------GRLTVVLLKARNLP 359
             .|.|.:.:: ...:|||  :..|..:.|||:.::|.:.|.|         |.:.:.|.:..|||
 Frog  1845 -WDWSNKQMN-WYPLQPRTPAAGIGLENRGEMKLALKYVPEAFTGAKNAGTGEVHIWLKECTNLP 1907

  Fly   360 RMDVTGLADPYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELM 424
            .:....: :.::|..:|.:..|.:::||....:|.:|.||.:..:|....|    .|:...:||.
 Frog  1908 MLRGNKI-NSFIKCTILPDTSRKSRQKTRAVDKTPNPYFNHTMVYDGFRKE----DLKEACVELT 1967

  Fly   425 LLDWDRVTKNEVIGRLELG------------GPNSSSTALNHWNEVCNSP 462
            :.|.:::| |..:|.|.:|            ..:|::.....|.::..||
 Frog  1968 VWDHNKLT-NHFLGGLRIGLGTGKSYGTPVDWMDSNAAEATTWEKMITSP 2016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 41/147 (28%)
C2B_Synaptotagmin-4 332..473 CDD:176049 35/152 (23%)
sytl2XP_012812257.2 PHD_SF 5..>44 CDD:419867
C2A_SLP-1_2 1734..1858 CDD:176039 41/142 (29%)
C2B_SLP_1-2-3-4 1871..2027 CDD:175987 35/152 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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