DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt4 and Syt3

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_061995.1 Gene:Syt3 / 25731 RGDID:3805 Length:588 Species:Rattus norvegicus


Alignment Length:475 Identity:145/475 - (30%)
Similarity:210/475 - (44%) Gaps:103/475 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 PFQPTRRPTAVRSPSGQPPHYLKKSPSPTGGKQMGLLSPMQDQSTSPIAQPNVKYSEEGDGPAQH 118
            ||.....|..:.......|.||.....|.......:.:.::...|||...     ||.|.|    
  Rat   142 PFAELLEPGGLGGSEPPEPSYLDMDSYPEAAVASVVAAGVKPSQTSPELP-----SEGGTG---- 197

  Fly   119 AEQQNGNQLTVVDGNGLKHSLHNSLHHSPVETIA-------------NGSVTITLDDHS------ 164
                :|..|....|.||.    ::..|..|.::|             ..::|...|..|      
  Rat   198 ----SGLLLLPPSGGGLP----SAQSHQQVTSLAPTTRYPALPRPLTQQTLTTQADPSSEERPPA 254

  Fly   165 ----LTNGKELTV------------TDQYGK------------LGTIYFKLRYLAERNALMVSII 201
                |..|:|...            |...|:            .|.|.|.||||...:.|:|.|:
  Rat   255 LPLPLPGGEEKAKLIGQIKPELYQGTGPGGRRTGGGSGEAGAPCGRISFALRYLYGSDQLVVRIL 319

  Fly   202 RCRGLPCKGGSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQHKVKTRVVRNTRNPVYDEDFTFY 266
            :...||.|..           ||    .:|||||:.||||::.|.:|:|.|.|.||:::|.|.| 
  Rat   320 QALDLPAKDS-----------NG----FSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF- 368

  Fly   267 GLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDISKEALSISKEIQPRSL--KIRA 329
            .:.:.:|....|||.:..|||:||.|:||:||.           ...|.::::...|.|  .|..
  Rat   369 SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVL-----------DNLLELAEQPPDRPLWRDILE 422

  Fly   330 QGR-----GELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYVKIYLLYNGQRIAKKKTHV 389
            .|.     |||..|||:.|.||.|||.::||.||..||:||.:|||||..|:..|:|:.|:||.:
  Rat   423 GGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSI 487

  Fly   390 KKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNEVIGRLELGGPNSSSTALNH 454
            ||.||:|.:||:..||:     |..|:|.|.|.:.::|:|.:..|||||...:|...:......|
  Rat   488 KKNTLNPTYNEALVFDV-----APESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREH 547

  Fly   455 WNEVCNSPRRQIAEWHKLNE 474
            |.|:..:||:.:..||:|.|
  Rat   548 WAEMLANPRKPVEHWHQLVE 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 49/154 (32%)
C2B_Synaptotagmin-4 332..473 CDD:176049 60/145 (41%)
Syt3NP_061995.1 Cysteine motif. /evidence=ECO:0000250|UniProtKB:O35681 10..34
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 129..161 3/18 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..222 14/55 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..257 3/18 (17%)
C2A_Synaptotagmin-1-5-6-9-10 297..422 CDD:176031 52/151 (34%)
C2B_Synaptotagmin-3-5-6-9-10 431..565 CDD:176048 60/138 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X61
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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