DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt4 and Syt3

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001107588.1 Gene:Syt3 / 20981 MGIID:99665 Length:587 Species:Mus musculus


Alignment Length:485 Identity:154/485 - (31%)
Similarity:220/485 - (45%) Gaps:93/485 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PDASVMDTIVPAILGLTAAAVLSSVACICARQMRLRNKKQSQHDASFPFQ----------PTRRP 61
            |:.|.:|     :.....|||.|.||.         ..|.||.....|.:          |   |
Mouse   158 PEPSYLD-----MDSYPEAAVASVVAA---------GVKPSQTSPELPSEGGTGSGLLLLP---P 205

  Fly    62 TAVRSPSGQPPHYLKKSPSPTGGKQMGLLSPMQDQSTSPIAQPNVKYSEEGDGPAQHAEQQNGNQ 126
            :....||.| .|....|.:|| .:...|..|:..|:.:..|.|    |.|...||.......|.:
Mouse   206 SGGGLPSAQ-SHQQVTSLAPT-TRYPALPRPLTQQTLTTQADP----STEERPPALPLPLPGGEE 264

  Fly   127 LTVVDGNGLKHSLHNSLHHSPVETIANGSVTITLDDHSLTNGKELTVTDQYGKLGTIYFKLRYLA 191
            ...:.|. :|..|:...  .|......||                  .:.....|.|.|.||||.
Mouse   265 KAKLIGQ-IKPELYQGT--GPGGRRGGGS------------------GEAGAPCGRISFALRYLY 308

  Fly   192 ERNALMVSIIRCRGLPCKGGSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQHKVKTRVVRNTRN 256
            ..:.|:|.|::...||.|..           ||    .:|||||:.||||::.|.:|:|.|.|.|
Mouse   309 GSDQLVVRILQALDLPAKDS-----------NG----FSDPYVKIYLLPDRKKKFQTKVHRKTLN 358

  Fly   257 PVYDEDFTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDISKEALSISKEIQ 321
            |:::|.|.| .:.:.:|....|||.:..|||:||.|:||:||.           ...|.::::..
Mouse   359 PIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVL-----------DNLLELAEQPP 411

  Fly   322 PRSL--KIRAQGR-----GELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYVKIYLLYNG 379
            .|.|  .|...|.     |||..|||:.|.||||||.::||.||..||:||.:|||||..|:..|
Mouse   412 DRPLWRDILEGGSEKADLGELNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 476

  Fly   380 QRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNEVIGRLELGG 444
            :|:.|:||.:||.||:|.:||:..||:     |..|:|.|.|.:.::|:|.:..|||||...:|.
Mouse   477 RRLKKRKTSIKKNTLNPTYNEALVFDV-----APESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 536

  Fly   445 PNSSSTALNHWNEVCNSPRRQIAEWHKLNE 474
            ..:......||.|:..:||:.:..||:|.|
Mouse   537 EAADPHGREHWAEMLANPRKPVEHWHQLVE 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 49/142 (35%)
C2B_Synaptotagmin-4 332..473 CDD:176049 61/145 (42%)
Syt3NP_001107588.1 Cysteine motif. /evidence=ECO:0000269|PubMed:10531343 10..34
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..258 21/83 (25%)
C2A_Synaptotagmin-1-5-6-9-10 297..421 CDD:176031 52/150 (35%)
C2B_Synaptotagmin-3-5-6-9-10 430..564 CDD:176048 61/138 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X61
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

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