DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt4 and Syt2

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001342655.1 Gene:Syt2 / 20980 MGIID:99666 Length:422 Species:Mus musculus


Alignment Length:452 Identity:144/452 - (31%)
Similarity:222/452 - (49%) Gaps:104/452 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 KKSPSPTGGKQMGLLSPMQDQSTSPIAQ-PNVKYSEEGDGPAQHAEQQNGNQLTVVDGNGLKHSL 139
            |::..|.       ::|....:|.|:|. .....|.|..||.:..|.....         ||...
Mouse     6 KRNQEPN-------VAPATTTATMPLAPVAPADNSTESTGPGESQEDMFAK---------LKEKF 54

  Fly   140 HNSLHHSPVE-------TIANGSVTITL------------------------------------D 161
            .|.::..|:.       .:..|.:.:|.                                    |
Mouse    55 FNEINKIPLPPWALIAMAVVAGLLLLTCCFCICKKCCCKKKKNKKEKGKGMKNAMNMKDMKGGQD 119

  Fly   162 DHSLTNGKELTVTDQYGK-------LGTIYFKLRYLAERNALMVSIIRCRGLPC--KGGSSGTGD 217
            |.....|  ||..:..|:       ||.:.|.|.|..:.|.|.|.:::...||.  .||:|    
Mouse   120 DDDAETG--LTEGEGEGEEEKEPENLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTS---- 178

  Fly   218 IPTGMNGRTQAATDPYVKLQLLPDKQHKVKTRVVRNTRNPVYDEDFTFYGLNMNDLQNMSLHFVI 282
                         |||||:.|||||:.|.:|:|.|.|.||.::|.||| .:...:|...:|...|
Mouse   179 -------------DPYVKVFLLPDKKKKYETKVHRKTLNPAFNETFTF-KVPYQELGGKTLVMAI 229

  Fly   283 LSFDRYSRDDVIGEVVCPLTSIEIGDISKE--ALSISKEIQPRSLKIRAQGRGELLISLCWQPAA 345
            ..|||:|:.|:||||..|:.::::|...:|  .|...::.:|..|       |::..||.:.|.|
Mouse   230 YDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKEEPEKL-------GDICTSLRYVPTA 287

  Fly   346 GRLTVVLLKARNLPRMDVTGLADPYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAE 410
            |:|||.:|:|:||.:|||.||:||||||:|:.||:|:.||||.|||:||:|.|||||:|:||..:
Mouse   288 GKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQ 352

  Fly   411 GAGASLEGVSLELMLLDWDRVTKNEVIGRLELGGPNSSSTALNHWNEVCNSPRRQIAEWHKL 472
                 ::.|.:.:.:||:|::.|||.||::.:|. |::.|.|.||:::..:|||.||:||.|
Mouse   353 -----IQKVQVVVTVLDYDKLGKNEAIGKIFVGS-NATGTELRHWSDMLANPRRPIAQWHSL 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 50/153 (33%)
C2B_Synaptotagmin-4 332..473 CDD:176049 69/141 (49%)
Syt2NP_001342655.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 10/43 (23%)
Syt2_N 4..116 CDD:409249 17/125 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 102..141 6/40 (15%)
Phospholipid binding. /evidence=ECO:0000305 136..382 108/276 (39%)
C2A_Synaptotagmin-1-5-6-9-10 142..264 CDD:176031 49/139 (35%)
C2B_Synaptotagmin-1 274..409 CDD:176047 70/148 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X61
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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