DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt4 and snt-5

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_503409.1 Gene:snt-5 / 178631 WormBaseID:WBGene00004925 Length:458 Species:Caenorhabditis elegans


Alignment Length:501 Identity:138/501 - (27%)
Similarity:225/501 - (44%) Gaps:109/501 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IVPAILGLTAAAVLSSVAC-----ICARQMRLRNKKQSQHDASFPFQPTRRPTAVRSPSGQPPHY 74
            ::.|||.| .|.:|||.|.     ||.||:: |..|.|:...|.|      ...|..|.......
 Worm     8 VLVAILSL-CAVILSSCALYFGARICVRQIK-RKVKYSEVPTSVP------EIKVSVPQSASTLS 64

  Fly    75 LKKSPSPTGGKQMGLLS------PMQDQS------TSPIAQPNVKYSEE-----GDGPAQHAEQQ 122
            :.|.   .|..:..:||      |..|::      :||...|.:..:.:     ||.|...:..:
 Worm    65 ISKM---NGSYRARVLSRNGCSPPWMDRNFETSTRSSPCTSPAIASTSDSCELLGDDPRSASSMR 126

  Fly   123 NGNQLTVVDGNGLKHSLHNSLHHSP-----VETIANGSVT-ITLDDHSLTNGKELTVTDQYGKLG 181
            |...|..||||             |     :|.|...||. ..|..:..|:|..:.        |
 Worm   127 NSMFLFNVDGN-------------PEVIDEMEDIDERSVMHYELGFYDKTDGGCIR--------G 170

  Fly   182 TIYFKLRYLAERNALMVSIIRCRGLPC--KGGSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQH 244
            |:.|.|||......||:.:||...||.  ||                 ...|||||:.|||:::.
 Worm   171 TLTFALRYDFIHRVLMLHVIRANNLPVEDKG-----------------VTVDPYVKMYLLPERRG 218

  Fly   245 KVKTRVVRNTRNPVYDEDFTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDI 309
            ..|||:.:.|.:|.::|.|:| .::.|:|.|..|.|.:..|||::|..:||.::. ....|..|:
 Worm   219 HCKTRICKKTNDPEFNEMFSF-DVSFNNLANRMLQFTVYDFDRFTRHGLIGNIIM-RDLFEKSDL 281

  Fly   310 ---SKEALSISKEIQPRSLKIRAQGR---GELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLAD 368
               ::..:.|          :.:|.:   |:||:.|.:.....:|.:.:.||.||..||:||.:|
 Worm   282 YTWTEYTMHI----------VASQNKNDYGDLLLFLTYSNQEEKLYINVSKAYNLRPMDITGASD 336

  Fly   369 PYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTK 433
            |||||...:||:|...||:..|:..|:|||:|:..||||:::     :...::.:.::||||:.|
 Worm   337 PYVKIEQTFNGKRFKSKKSSTKRANLNPVFHETLVFDIPSSQ-----IAETNILIQVMDWDRIGK 396

  Fly   434 NEVIGRLELGGPNSSSTALNHWNEVCNS-------PRRQIAEWHKL 472
            ::::|...||..:.::.....|:...|:       ..:.:.:||.|
 Worm   397 DDLLGCCILGKDSPTADGKTQWDNCLNAVPEEGQLKNKPVGQWHSL 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 44/147 (30%)
C2B_Synaptotagmin-4 332..473 CDD:176049 47/151 (31%)
snt-5NP_503409.1 C2 169..277 CDD:301316 41/134 (31%)
C2B_Synaptotagmin 301..442 CDD:175975 46/145 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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