DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt4 and rph3a

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_031748610.1 Gene:rph3a / 100487950 XenbaseID:XB-GENE-5881709 Length:703 Species:Xenopus tropicalis


Alignment Length:548 Identity:139/548 - (25%)
Similarity:226/548 - (41%) Gaps:133/548 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SSVACICARQMRLRNKKQSQHDASF-------------PFQ---------------PTRRPTAVR 65
            |:|:....::.:...:.||:.|.||             |::               |.|:..:..
 Frog   181 SAVSEDSGQEQKRYPRTQSRGDYSFTAQVELAAQPDQEPYETESTAANPGRTNYPPPARKAESRM 245

  Fly    66 SPSG---------------------QPPHYLKKSPS-----PTGGKQMGLLSPMQD---QSTSPI 101
            :|||                     :.|..:|:..|     ||...|...:.|.|.   .|..|.
 Frog   246 APSGSEYEGEETRDSSYGGVDNDINRSPGGVKRGSSVQGTRPTSAVQGSNIQPTQQAPPASARPA 310

  Fly   102 AQPNV--KYSEEGDGPAQHAEQQNGNQLTVVDGNGLKHSL------------HNSLHHSPVETIA 152
            |:|..  ::.||..|....|.|........|..|....|.            ..:.:.|.|.|:|
 Frog   311 ARPTPANRFPEEQGGTTLPASQPESTYSASVPRNEKADSFTPQGVRQDRPLRQAASYTSSVPTVA 375

  Fly   153 NGSVTITLDDHSLTNGKELTVTDQYGK-----LGTIYFKLRYLAERNALMVSIIRCRGLPCKGGS 212
            ..|..     ...|..:|....:.|..     ||::.|.|.|..|.|:|...||:.:||.     
 Frog   376 APSAR-----QPQTQDEEEEEANSYDSDEATTLGSLEFSLFYDQENNSLHCGIIKAKGLK----- 430

  Fly   213 SGTGDIPTGMNGRTQAATDPYVKLQLLP--DKQHKVKTRVVRNTRNPVYDEDFTFYGLNMNDLQN 275
                  |...||    ..||||||.|||  .|.:|::|:.:||||||:::|...::|:...:||.
 Frog   431 ------PMDSNG----LADPYVKLHLLPGASKANKLRTKTLRNTRNPIWNETLVYHGITDEELQR 485

  Fly   276 MSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDISKEALSISKEIQPRSLKIRAQG--------- 331
            .:|...:...|::..::.|||....|..::..  .|::.::..|   |.:.::..|         
 Frog   486 KTLRISVCDEDKFGHNEFIGETRFSLKKLKPN--QKKSFNVCLE---RVIPMKRAGTTGSVRGMA 545

  Fly   332 --------------RGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYVKIYLLYNGQRI 382
                          ||::|:||.:....|.|.|.:::..:|..||..|.:||:||::|..:..:.
 Frog   546 LYEDENDRGGDVEERGKILVSLMYNTQQGGLIVGIVRCVHLAAMDANGYSDPFVKLWLKPDMGKK 610

  Fly   383 AKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNEVIGRLELGGPNS 447
            ||.||.:||:||:|.|||.|.::|..::     |....|::.:.|:|....|:.||..:| |.|:
 Frog   611 AKNKTQIKKKTLNPEFNEEFFYEIKHSD-----LAKKQLDVSVWDYDIGKSNDYIGGCQL-GINA 669

  Fly   448 SSTALNHWNEVCNSPRRQIAEWHKL-NE 474
            ....|.||.|...:..::|..||.| ||
 Frog   670 KGERLKHWYECLKNKDKKIERWHVLQNE 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 45/149 (30%)
C2B_Synaptotagmin-4 332..473 CDD:176049 49/141 (35%)
rph3aXP_031748610.1 FYVE_RP3A 92..171 CDD:277301
C2A_Rabphilin_Doc2 403..526 CDD:176000 44/139 (32%)
C2B_Rabphilin_Doc2 562..694 CDD:176030 46/137 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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