DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt4 and rph3a

DIOPT Version :10

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_031748610.1 Gene:rph3a / 100487950 XenbaseID:XB-GENE-5881709 Length:703 Species:Xenopus tropicalis


Alignment Length:548 Identity:139/548 - (25%)
Similarity:226/548 - (41%) Gaps:133/548 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SSVACICARQMRLRNKKQSQHDASF-------------PFQ---------------PTRRPTAVR 65
            |:|:....::.:...:.||:.|.||             |::               |.|:..:..
 Frog   181 SAVSEDSGQEQKRYPRTQSRGDYSFTAQVELAAQPDQEPYETESTAANPGRTNYPPPARKAESRM 245

  Fly    66 SPSG---------------------QPPHYLKKSPS-----PTGGKQMGLLSPMQD---QSTSPI 101
            :|||                     :.|..:|:..|     ||...|...:.|.|.   .|..|.
 Frog   246 APSGSEYEGEETRDSSYGGVDNDINRSPGGVKRGSSVQGTRPTSAVQGSNIQPTQQAPPASARPA 310

  Fly   102 AQPNV--KYSEEGDGPAQHAEQQNGNQLTVVDGNGLKHSL------------HNSLHHSPVETIA 152
            |:|..  ::.||..|....|.|........|..|....|.            ..:.:.|.|.|:|
 Frog   311 ARPTPANRFPEEQGGTTLPASQPESTYSASVPRNEKADSFTPQGVRQDRPLRQAASYTSSVPTVA 375

  Fly   153 NGSVTITLDDHSLTNGKELTVTDQYGK-----LGTIYFKLRYLAERNALMVSIIRCRGLPCKGGS 212
            ..|..     ...|..:|....:.|..     ||::.|.|.|..|.|:|...||:.:||.     
 Frog   376 APSAR-----QPQTQDEEEEEANSYDSDEATTLGSLEFSLFYDQENNSLHCGIIKAKGLK----- 430

  Fly   213 SGTGDIPTGMNGRTQAATDPYVKLQLLP--DKQHKVKTRVVRNTRNPVYDEDFTFYGLNMNDLQN 275
                  |...||    ..||||||.|||  .|.:|::|:.:||||||:::|...::|:...:||.
 Frog   431 ------PMDSNG----LADPYVKLHLLPGASKANKLRTKTLRNTRNPIWNETLVYHGITDEELQR 485

  Fly   276 MSLHFVILSFDRYSRDDVIGEVVCPLTSIEIGDISKEALSISKEIQPRSLKIRAQG--------- 331
            .:|...:...|::..::.|||....|..::..  .|::.::..|   |.:.::..|         
 Frog   486 KTLRISVCDEDKFGHNEFIGETRFSLKKLKPN--QKKSFNVCLE---RVIPMKRAGTTGSVRGMA 545

  Fly   332 --------------RGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGLADPYVKIYLLYNGQRI 382
                          ||::|:||.:....|.|.|.:::..:|..||..|.:||:||::|..:..:.
 Frog   546 LYEDENDRGGDVEERGKILVSLMYNTQQGGLIVGIVRCVHLAAMDANGYSDPFVKLWLKPDMGKK 610

  Fly   383 AKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNEVIGRLELGGPNS 447
            ||.||.:||:||:|.|||.|.::|..::     |....|::.:.|:|....|:.||..:| |.|:
 Frog   611 AKNKTQIKKKTLNPEFNEEFFYEIKHSD-----LAKKQLDVSVWDYDIGKSNDYIGGCQL-GINA 669

  Fly   448 SSTALNHWNEVCNSPRRQIAEWHKL-NE 474
            ....|.||.|...:..::|..||.| ||
 Frog   670 KGERLKHWYECLKNKDKKIERWHVLQNE 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 45/149 (30%)
C2B_Synaptotagmin-4 332..473 CDD:176049 49/141 (35%)
rph3aXP_031748610.1 FYVE_RP3A 92..171 CDD:277301
C2A_Rabphilin_Doc2 403..526 CDD:176000 44/139 (32%)
C2B_Rabphilin_Doc2 562..694 CDD:176030 46/137 (34%)
Blue background indicates that the domain is not in the aligned region.

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