DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt4 and syt3

DIOPT Version :9

Sequence 1:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_005164031.1 Gene:syt3 / 100000615 ZFINID:ZDB-GENE-090601-1 Length:566 Species:Danio rerio


Alignment Length:437 Identity:145/437 - (33%)
Similarity:200/437 - (45%) Gaps:87/437 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 VRSPSGQPPH-YLKKSPSPTGGKQMGLLSPMQDQSTSPIAQPNVKYSEEGDGPAQHAEQQNGNQL 127
            |..|.....| ||.....|.....:.|      ..|||...|    :.||...|:.....:..|.
Zfish   163 VGGPQEMQEHSYLDMDSYPNNAATLKL------SQTSPELPP----ATEGGSAAKDLPNAHSQQQ 217

  Fly   128 TVVDGNGLKHSLHNSLHHSPVETIANGSVTITLDDHSLTNGKELTVTDQY--------------G 178
            .......:.|.|     .||             |.|.....::||...|.              |
Zfish   218 VTTRPKPMTHQL-----SSP-------------DFHGEEKSEQLTSIGQIKPELYRLRQGDQGDG 264

  Fly   179 K----LGTIYFKLRYLAERNALMVSIIRCRGLPCKGGSSGTGDIPTGMNGRTQAATDPYVKLQLL 239
            |    .|.|.|.|||......|:|.|::...||.|..           ||    .:|||||:.||
Zfish   265 KQGNNCGKISFLLRYAFNTEQLVVKILKALDLPAKDA-----------NG----FSDPYVKIYLL 314

  Fly   240 PDKQHKVKTRVVRNTRNPVYDEDFTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCP-LTS 303
            ||::.|.:|:|.|.|.|||::|.|.| |:.:.:|....|||.:..|||:||.|:||:||.. |..
Zfish   315 PDRKKKFQTKVHRKTLNPVFNETFQF-GVPLAELHARKLHFSVYDFDRFSRHDLIGQVVVDNLLD 378

  Fly   304 IEIGDISKEALSISKEIQPRSLKIRAQGR------GELLISLCWQPAAGRLTVVLLKARNLPRMD 362
            ...|...|   .|.::|        .:|.      |||..|||:.|.||||||.::||.||..||
Zfish   379 FSEGTGEK---PIWRDI--------VEGTAEKADLGELNFSLCYLPTAGRLTVTIIKATNLKAMD 432

  Fly   363 VTGLADPYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLD 427
            :||.:|||||..|:..|:|:.|:||.:||.||:|.:||:..||||     ..::|.|||.:.::|
Zfish   433 LTGFSDPYVKASLVCEGRRLKKRKTSIKKNTLNPTYNEALVFDIP-----NENIESVSLIIAVMD 492

  Fly   428 WDRVTKNEVIGRLELGGPNSSSTALNHWNEVCNSPRRQIAEWHKLNE 474
            :|.:..|||||...:|. ::......||..:..:||:.|..||:|.|
Zfish   493 YDCIGHNEVIGMCRMGS-DADGPGREHWTAMLANPRKPIEHWHQLVE 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 55/147 (37%)
C2B_Synaptotagmin-4 332..473 CDD:176049 62/146 (42%)
syt3XP_005164031.1 C2A_Synaptotagmin-1-5-6-9-10 269..394 CDD:176031 54/151 (36%)
C2B_Synaptotagmin-3-5-6-9-10 403..536 CDD:176048 62/138 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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