DRSC/TRiP Functional Genomics Resources

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Protein Alignment Alh and SDG14

DIOPT Version :9

Sequence 1:NP_001262332.1 Gene:Alh / 40850 FlyBaseID:FBgn0261238 Length:1717 Species:Drosophila melanogaster
Sequence 2:NP_191733.3 Gene:SDG14 / 825347 AraportID:AT3G61740 Length:1018 Species:Arabidopsis thaliana


Alignment Length:364 Identity:102/364 - (28%)
Similarity:154/364 - (42%) Gaps:77/364 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TIHSTSLNK-KLVKIKKFKLDDM--KEMVGGCCVCSDERGWPENPLVYCDGQNCTVAVHQACYGI 94
            |:.:..|:| |::.:.:.|.:.:  |.....|.||.....|.||.::.|:  .|.|||||.|||:
plant   518 TLETQMLDKQKMLSLLEEKYEPVRAKWTTERCAVCRWVEDWEENKMIICN--RCQVAVHQECYGV 580

  Fly    95 -VTVPTGPWYCRKCESQ--ERTSRVRCELCPSRDGALKKTDNSG-WAHVVCALYIPEVRFGNVTT 155
             .:.....|.||.||:.  ||.    |.|||.:.||||.:|..| |.||.||.:.|||.|.|...
plant   581 SKSQDLTSWVCRACETPDIERD----CCLCPVKGGALKPSDVEGLWVHVTCAWFRPEVGFLNHEN 641

  Fly   156 MEPII-LSLIPQERYSKTCYICQEIGKPNRANVGACMQCNKSNCKQQFHVTCAQSLGLLCEEAGN 219
            |||.: |..||...:.|.|.||::       ..|:|:.|.|  |...||..||...|...|    
plant   642 MEPAVGLFKIPANSFLKVCTICKQ-------THGSCVHCCK--CATHFHAMCASRAGYNME---- 693

  Fly   220 YLDNVKYCGYCQHHYSKLKKGGNVKTIPPYKPIQHDTSSDSCSSPEK-EIDSTMNSATTSATIIK 283
                 .:|         |:|.|          :|....|..||...| :.||          ::.
plant   694 -----LHC---------LEKNG----------VQRTRKSVYCSFHRKPDPDS----------VVV 724

  Fly   284 ITSSSGSAGGSSNVLNASSSAGISAGSSSGSGVSSSAKQRKSNASSKSSSSSS---SSSSSSTGG 345
            :.:.|| ..||.|:|..      ..|.:.||.:..:.|.:.....:::.:..|   .|.|::...
plant   725 VHTPSG-VFGSRNLLQN------QYGRAKGSRLVLTKKMKLPGFQTQTQAEQSRVFDSLSAARCR 782

  Fly   346 APNPSSSSVHSGSASNMTGGGSVLPGSSNIGNISNSLNN 384
            ..:.|::.:...:.|:...|    |...::..|.| ||:
plant   783 IYSRSNTKIDLEAISHRLKG----PSHHSLSAIEN-LNS 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlhNP_001262332.1 PHD_AF10_AF17 60..107 CDD:277049 19/47 (40%)
ePHD_AF10_like 118..233 CDD:277142 42/116 (36%)
SDG14NP_191733.3 WHSC1_related 187..290 CDD:99899
PHD_TCF19_like 365..415 CDD:276992
PHD_ATX3_4_5_like 548..594 CDD:276970 19/47 (40%)
ePHD_ATX3_4_5_like 603..714 CDD:277133 49/147 (33%)
SET 875..992 CDD:214614
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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