DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Alh and TIC

DIOPT Version :9

Sequence 1:NP_001262332.1 Gene:Alh / 40850 FlyBaseID:FBgn0261238 Length:1717 Species:Drosophila melanogaster
Sequence 2:NP_001118676.1 Gene:TIC / 821807 AraportID:AT3G22380 Length:1555 Species:Arabidopsis thaliana


Alignment Length:1628 Identity:356/1628 - (21%)
Similarity:581/1628 - (35%) Gaps:431/1628 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 SKLKKGGNVKTIPPYKPIQHDTSSDSCSSPEKEIDSTMNSATTSATIIKITSSSGSAGGSSNVLN 299
            ||.::|..:..:........|.||:...:.::|.|.......:|..::..|        |:|:..
plant    83 SKRRRGERLMMVHGNLDDGGDDSSEESVNDDEEYDDGGVGPPSSLKMLPPT--------SNNISA 139

  Fly   300 ASSSAGISAGSSSGSG-------VSSSAKQRKSN-----ASSKSSSSSSSSSSSSTGGA------ 346
            ||.|:.:|...:.|||       ..::..|||:|     ....|.|.:..|...||..|      
plant   140 ASFSSSLSNHHNGGSGNLHHHHHSHNNNHQRKNNFPPTKVFRSSPSPAPVSPLVSTWKAADEMIG 204

  Fly   347 ---PNPSSSSV----HSGSASNMTGGGSVLPGSSNIGNISNSLNNNLPGGSSSTSSAGNVPGGSG 404
               |..:.|:.    |...||:.||||....|......|            ||||.|..|...| 
plant   205 VSVPRKARSACTKRPHESWASSTTGGGVFASGEQIHRQI------------SSTSPANRVSPAS- 256

  Fly   405 GIISASSGGATQSTSSQSSTA----PGTTK------SSASSSSSSSNSYKEKHSKSLSK------ 453
             |:::.|..|..|.||.|.:.    |..||      .|:||..||..:.:::....:::      
plant   257 -ILASPSPPAPTSPSSSSISVRKKLPSGTKQKPLPPKSSSSKLSSPVAVQDEIEIEIAEVLYGMM 320

  Fly   454 ---STSSKDKDGKDSSTNSANNNFTNSSASSTSSNSSSTREKSSSKLSKNKDSNQVPSATSSLST 515
               |||.::..|.| .|.:|.:.....|..|:..::..|..:||..|:.|..|:.|.:.......
plant   321 RMPSTSKQEAAGND-LTEAAKSTVEVKSRVSSPISNPQTLPQSSITLAANSSSSNVSAIAPKRKK 384

  Fly   516 TSSINTQPSSSTSTATAGSGGTGTHVSSSAASGLNSAPSTTN-EHSNHAHTLSTNGTGAGSAAGK 579
            ...:..:..:|:...|         :.|.|     .|||.:. ..||.   |.::|:|.|::: .
plant   385 PRHVKYEDDNSSRVTT---------IKSEA-----EAPSKSQVPFSNQ---LKSSGSGEGNSS-V 431

  Fly   580 LQSVSNLS-NSSSGFGSDLRSVSTSSSSTV---NDSTGGFGS------NSNSERENLS------G 628
            |.|:..|: .|::...|:.:..:.|...|:   .:|:.||.|      :|:.|:|...      .
plant   432 LDSIIPLTRESNASLDSEKKENNLSKDETILPKVESSSGFRSDGEGAKSSSPEKEKFEIDLMAPP 496

  Fly   629 AGSSASNMPGTIAPGTGGVSSSAATNLSTNKGGSSSSTANSLTSTSTSSGSSSNSSSKKR----- 688
            ...|:|...|.:.......:....|.:.|.        |..|.....|..:..:|..|||     
plant   497 PVRSSSERGGEMMECVAAEAKPKVTEVETE--------AKPLLKEDRSDPAIHDSQEKKRPRMVA 553

  Fly   689 -------------KADSAKSTSSISTSGSALEDNNSLISRYDIKDVQVALTPLTDFEKEIEKSSK 740
                         |.|..||            |:..|::::                 .::|...
plant   554 EAEHHKFERNCELKLDLDKS------------DHVGLVNKH-----------------HVQKPPP 589

  Fly   741 RQRTELSPPTHQTSATAEVNAPLASS---------TSASIAVT----------ASATAASAPP-- 784
            :|:..:...|.|.|     :.||..|         |...:|.|          .||.|...||  
plant   590 QQQLSVPDKTAQAS-----HLPLHMSMPGWPGGLPTMGYMAPTQGVVPTDTSSLSAAAMQPPPHL 649

  Fly   785 ----------ATGTTTLGSSISGNAGSTSSGNSSGVSATGGA----QSAVGSGGYPKTESSKSSG 835
                      || ...:..:|..:...|.. |....:|.|.|    ..|......|.||..    
plant   650 LFNQPRPKRCAT-HCYIARNIQSHQQFTKM-NPFWPAAAGSAPMYGTKACNLSLMPPTELQ---- 708

  Fly   836 TASAGSGSGSSSNTSSTKHGSNIKDISSSSN------QQASTASSSSA--------------PSL 880
                ||..|.|||....|:..:....|.::.      |||....::::              |..
plant   709 ----GSVLGRSSNPVQDKNSQSTSKSSETAQRNQLMLQQALPPGAANSILHGPTFIFPLGQQPHA 769

  Fly   881 YVSVPLSTANVPGINLPTSSTSSSTTSESHSASSRSSGAQSQHQQQLSNALVGPPMGGSAGAFHG 945
            ..::..::...|...:.:|..::::||.:.|||:..:||              |.|..|..|..|
plant   770 AATIAAASVRPPNSGITSSGPTATSTSMNGSASATPAGA--------------PTMSFSYPAMPG 820

  Fly   946 GTTSAGSSSVIQQQSGKSSPALGTLVSGNSGG--SIISASGFPLPSGNLTATTTESGNLKIS--- 1005
            ..|   ....|.|.:|...|     |..:.|.  :...|.|.|:|..|        |:...|   
plant   821 NET---QYLAILQNNGYPFP-----VPAHVGAQPAYRGAPGQPMPFFN--------GSFYSSQMI 869

  Fly  1006 ----YEKQTTRVQQLQEQ----EAPPARRSRSRSGESGSSHHHAHAHHHHHHP--THHNS----- 1055
                ::.|....|||..|    .||   .:::.|..:|||....|..:....|  .|.||     
plant   870 QPPHHQPQKQHQQQLTGQMLQSHAP---NNQNGSASTGSSAAQKHLQNQQLRPPINHGNSQGFPT 931

  Fly  1056 HHQQNPQQQQQLHQQQQQNASSHMHACTNSSSSTSTSTTSSSLSGGTAPATSSSNSKGPSRS--- 1117
            |..|:.....|..||.::||:.|                 |...|..:|:|:.|..   |||   
plant   932 HKVQSQPLNFQQRQQPRENATQH-----------------SETVGEDSPSTADSRG---SRSNVA 976

  Fly  1118 -GKKRGAAMNKSESTSVATTATPAT------VAATPAEKQSRH----------SSPHYSATPTPP 1165
             |:..|..|   :.|::...::||.      .:::..||:|:.          .||.|:.|    
plant   977 YGQNYGMQM---QPTNLGLMSSPAPGGGVVGSSSSHGEKKSQQQVSKAGVESFQSPGYAMT---- 1034

  Fly  1166 PTSTLPPVVSSPVVMLQSLSS--SSIDSPPATA-------AAGATSNSRN---TRNNSSNGNHNG 1218
             .:|.....::|.:.:.|::.  :...|.|..|       ||.|.....|   :..:..:|:..|
plant  1035 -FATFNGANTAPTLNMSSIAQNHAMFHSMPEAARQGYQMMAAQAAQQKMNYGASLEDGKSGSIGG 1098

  Fly  1219 EQTSSSSSSSSSSSSGG--GGTSGA--------ANVVNLLDSPVNMSASGNYRSSSN---STGNA 1270
            ..|::::......|.||  |.|||.        :|..:|.|:.|:...||:...||:   :.|:|
plant  1099 AATANNTPEEQRKSGGGAIGKTSGGNGGQSIAFSNKQDLADASVSAVTSGSIVDSSSRLLNLGSA 1163

  Fly  1271 LPAASSNASQAKPLNKKMLRAQQTQLYQQQQQQQQYAPPARSISPTNLSSASASNSASLTHLQQQ 1335
            ||.:|.:...:.  ::::|:.||.|..|:.|.||.|............:|.:||.:.:...:...
plant  1164 LPQSSGSLPTSH--HQQLLQQQQQQHMQRSQSQQPYTTMYLQKQQRYATSVAASAARTKGPVVSN 1226

  Fly  1336 QQSHQQHEDLEILQFTNTNTTASSNTPTSKPNNRTLDLSTASASSSSPSAVPATTSPLVVLSNQL 1400
            ......|.    :..:...||..:|..:..|.|.....|....|....:..|.||:.....|..:
plant  1227 GSGFPDHN----MTTSPAGTTKFANANSGFPQNLVQSSSNQVQSQQWKNNSPRTTNTTQAQSPSM 1287

  Fly  1401 --PLNSVAASSSTGGLKFTYESQTQMDVPMMPVSAIKDSPPSSPGSEI----GSAMHSATTAPGS 1459
              |..||||:||...:....:|:.|..    .:|...:|.|.:.||.:    |...|.|.:.|..
plant  1288 LSPSTSVAAASSLRNIPHKQQSRPQQS----QISFAANSKPMTSGSPMQQVQGGTNHQAPSPPML 1348

  Fly  1460 LTGASTAATAQPGNVRKRGRKAKDATIAAAAAAAAAAAALSNSQQDLKDVRILQNGASNTPGNPA 1524
            :...||::.            :|:|:.:....|:|::||....|            ||.|  ..:
plant  1349 VGSPSTSSV------------SKNASGSPRTTASASSAANKGGQ------------ASTT--THS 1387

  Fly  1525 GSTPTPPATPASSNAVSSASSIITHTAAHMLGNQINPNSSVAQKLSEQL---------------- 1573
            .|.|:....|||  |.|||..  .:....:|||....:.|.:|: .:||                
plant  1388 ASQPSKNLQPAS--AASSAGG--RNNGPSVLGNPTTSSGSKSQQ-QQQLPKHGLQPQAQLFFSNP 1447

  Fly  1574 -----HMEVQDHSIYTPD-----SMNSQYAG----VPFPGKQRNSTAVPSNATPAQNPLQSMFSG 1624
                 |...|.....:|.     ..:.|.:|    ||..|.. .:|:.|:.|..|.:...:|..|
plant  1448 YMQAQHQHQQQQITISPSGGYYIQRHQQQSGSAPAVPVTGAV-TATSDPAKAIAAASAANNMKGG 1511

  Fly  1625 GGM 1627
            |||
plant  1512 GGM 1514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlhNP_001262332.1 PHD_AF10_AF17 60..107 CDD:277049
ePHD_AF10_like 118..233 CDD:277142
TICNP_001118676.1 GREB1 <1277..>1448 CDD:292410 48/205 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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