DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Alh and mllt6

DIOPT Version :9

Sequence 1:NP_001262332.1 Gene:Alh / 40850 FlyBaseID:FBgn0261238 Length:1717 Species:Drosophila melanogaster
Sequence 2:XP_012827247.2 Gene:mllt6 / 549549 XenbaseID:XB-GENE-1016790 Length:905 Species:Xenopus tropicalis


Alignment Length:915 Identity:286/915 - (31%)
Similarity:388/915 - (42%) Gaps:233/915 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 MKEMVGGCCVCSDERGWPENPLVYCDGQNCTVAVHQACYGIVTVPTGPWYCRKCESQERTSRVRC 118
            |||||||||||||||||.|||||||||..|.|||||||||||.||||||:|||||||||.:||||
 Frog    46 MKEMVGGCCVCSDERGWAENPLVYCDGHGCNVAVHQACYGIVQVPTGPWFCRKCESQERAARVRC 110

  Fly   119 ELCPSRDGALKKTDNSGWAHVVCALYIPEVRFGNVTTMEPIILSLIPQERYSKTCYICQEIGKPN 183
            :|||.::||||:|||.||||||||||||||:|.||.|||||:|..:|.:|::||||||::.|:.:
 Frog   111 DLCPHKEGALKRTDNGGWAHVVCALYIPEVQFANVLTMEPIVLQFVPHDRFNKTCYICEDQGRES 175

  Fly   184 RANVGACMQCNKSNCKQQFHVTCAQSLGLLCEEAGNYLDNVKYCGYCQHHYSKL-KKGGNVKTIP 247
            ||..||||.|||..|:|.|||||||..||||||....:|||||.|||::|::|: :....|..:|
 Frog   176 RAASGACMTCNKHGCRQAFHVTCAQMAGLLCEEEAQEVDNVKYIGYCKYHFNKMVRDPQKVSRLP 240

  Fly   248 -PYKP--------------------IQHDTSSDSCSSPEKEIDSTMNSATTSATIIKITSSSGSA 291
             |:.|                    .:|:||::|......|:.:...|:...    :.|...|||
 Frog   241 CPFVPGRCSRSGSPLDKSLLFRERQKKHETSTESPEVMRSEVKAKKPSSHRG----RKTGGKGSA 301

  Fly   292 GGSSNVLNASSSAGISAGSSSGSGVSSSAKQ----RKSNASSKSSSSSSSSSSSSTGGAPNPSSS 352
            |               .|.|..||.:||...    .|.....:.......:.....||...|:.:
 Frog   302 G---------------TGGSLPSGSASSPPDLITFPKLEEQDEEEDEEEDNDDEERGGPSKPTPT 351

  Fly   353 SVHSGSASNMTGGGSVLPGSSNIGNISNSLNNNLPG-------------GSSSTSSAGNVPGGSG 404
            |....:.|:.   ||::..|::....|.:.:.: ||             |.......||.....|
 Frog   352 SPPELTFSSF---GSIMRFSTDPSPNSRTWDPS-PGEHRPQKWGREAAEGPREKKHKGNKKSRHG 412

  Fly   405 -GIISASSGGATQSTSSQSSTAPGTTKSSASSSSSSSNSYKEKHSKSLSKSTSSKDKDGKDSSTN 468
             |....|....:.||:..:.|||....:..||..|.|     ..|..||....:.:||  ..|..
 Frog   413 PGRPRGSKNNPSHSTAPPTLTAPPRHYTHHSSLHSVS-----LESPLLSSGIYTSNKD--PISVR 470

  Fly   469 SANNNFTNSSASSTSSNSSSTREKSSSKLSKNKDSNQV---PSATSSLSTT-------------- 516
            :|.:....||..|..|:.|......|...|.:..:.||   |.:|.|:.::              
 Frog   471 AACSTPLPSSLLSHQSSLSPYSRGCSITPSSSASTTQVFSLPGSTFSIPSSHIFGSPLSMPPLLS 535

  Fly   517 -SSINTQPS-SSTSTATAGSGGTGTHVSSSAASGL-----NSAPSTTNEHSNHA-----HTLSTN 569
             :...|:|. ...|....||....:..|.|..|.|     .|.||..||...||     ..|..:
 Frog   536 QAESRTEPELEDCSFVCRGSSPRESLSSMSPISSLPPLFDPSVPSNQNESVPHATANLEQLLEKH 600

  Fly   570 GTGAGSAAGKLQSVSNLSNS-------------------------SSGFGSDLRSVST------- 602
            |....:....||::..|...                         |..|...|..|||       
 Frog   601 GEAGVNIVDMLQALHALQKENRSLQDQIMTLTARKEKLQLLNVQLSCPFPPTLPHVSTHLVGSQE 665

  Fly   603 ---SSSSTVNDSTGGFGSNSNSERENLSGAGS--------------------------------- 631
               |.|.|   |.|.|.:.::|..:..||..|                                 
 Frog   666 SLCSKSPT---SKGSFRAENSSSEDPHSGCPSRSSSCLSLHSTPPPGPLTQTGTQLSSLGAEQLM 727

  Fly   632 ------SASNMPGTIA--PGTGGVSSSAATNLSTN------KGG---SSSSTANSLTSTSTS--- 676
                  |||..|.|:|  |..|.:|.:..| ||.|      .||   ||..:.|.|.|::||   
 Frog   728 NGLVRASASGGPSTLAAFPFLGALSGNPGT-LSLNGILGAVNGGLQASSGQSQNPLLSSTTSAQI 791

  Fly   677 --SGSSSNSSSKKRKADSAKSTSSISTSGSALEDNNSLISRYDIKDVQVALTPLTDFEKEIEKSS 739
              |.::.|:.|:::: ...:....|:::..:.|..:.|.                ...:.|::..
 Frog   792 PASFANLNTLSEQQR-HLVQQLQQITSAHLSTEQQSILF----------------QLVQHIQQRR 839

  Fly   740 KRQRTELSPPTHQTSATAEVNAPLASSTSASIAVTASATAASAPPATGTTT------LGSSISGN 798
            ..||...|||.          .||       :.||::.||.|:.||....|      |||.:.|.
 Frog   840 DLQRLMTSPPA----------PPL-------LPVTSTCTAMSSSPAPPVLTAQAPPFLGSPVEGG 887

  Fly   799 AGSTS 803
            ...|:
 Frog   888 VSKTA 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlhNP_001262332.1 PHD_AF10_AF17 60..107 CDD:277049 40/46 (87%)
ePHD_AF10_like 118..233 CDD:277142 75/114 (66%)
mllt6XP_012827247.2 PHD_AF10_AF17 52..99 CDD:277049 40/46 (87%)
PHD_SF 106..230 CDD:419867 80/123 (65%)
CC_AF10 593..645 CDD:411015 5/51 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 196 1.000 Domainoid score I3065
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 369 1.000 Inparanoid score I2092
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004366
OrthoInspector 1 1.000 - - otm47725
Panther 1 1.100 - - O PTHR13793
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3088
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.150

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