DRSC/TRiP Functional Genomics Resources

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Protein Alignment Alh and brpf1

DIOPT Version :9

Sequence 1:NP_001262332.1 Gene:Alh / 40850 FlyBaseID:FBgn0261238 Length:1717 Species:Drosophila melanogaster
Sequence 2:NP_957310.1 Gene:brpf1 / 393991 ZFINID:ZDB-GENE-040426-731 Length:899 Species:Danio rerio


Alignment Length:288 Identity:99/288 - (34%)
Similarity:146/288 - (50%) Gaps:48/288 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 NKIPSSFNAKLELDSSKDDTIHSTSLNKKL---------VKIKKFKLD--------------DMK 55
            :|.....:.::|.|..::|.|....:|:|.         .::.::.:|              |..
Zfish   236 DKSAEELDEEVEYDIDEEDYIWLDIMNEKRRSDGVAPIPQEVFEYLMDRLEKESYFESHNKGDPS 300

  Fly    56 EMV---GGCCVCSDERGWPENPLVYCDGQNCTVAVHQACYGIVTVPTGPWYCRKCESQERTSRVR 117
            .::   ..||:|:|......|.:::||  .|.:||||.|||:..:|.|.|.||:| .|..:..|.
Zfish   301 ALIDEDAVCCICNDGECQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRRC-PQSPSRAVD 362

  Fly   118 CELCPSRDGALKKTDNSGWAHVVCALYIPEVRFGNVTTMEPI-ILSLIPQERYSKTCYICQEIGK 181
            |.|||::.||.|:||:|.||||||||:||||.|.|...:||| .:..||..|:..|||||::.|.
Zfish   363 CALCPNKGGAFKQTDDSRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGS 427

  Fly   182 PNRANVGACMQCNKSNCKQQFHVTCAQSLGL------LCEEAGNYLD-NVKYCGYCQHHYSKLKK 239
                  |||:||:|:||...|||||||..||      :.|...|... :|:...||..|    ..
Zfish   428 ------GACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIH----TP 482

  Fly   240 GGNVKTIPPYKPIQHDTSSDSCSSPEKE 267
            .|:.:.:.....:..| ||.|.:.||:|
Zfish   483 PGSARPLGGVGGVSAD-SSRSEAEPEEE 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlhNP_001262332.1 PHD_AF10_AF17 60..107 CDD:277049 20/46 (43%)
ePHD_AF10_like 118..233 CDD:277142 58/122 (48%)
brpf1NP_957310.1 EPL1 124..288 CDD:287484 8/51 (16%)
PHD_BRPF1 300..361 CDD:277146 22/63 (35%)
ePHD_BRPF1 363..483 CDD:277171 59/129 (46%)
Bromodomain 678..775 CDD:295360
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D566217at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1726
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.950

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