DRSC/TRiP Functional Genomics Resources

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Protein Alignment Alh and Jade3

DIOPT Version :9

Sequence 1:NP_001262332.1 Gene:Alh / 40850 FlyBaseID:FBgn0261238 Length:1717 Species:Drosophila melanogaster
Sequence 2:XP_011245778.1 Gene:Jade3 / 382207 MGIID:2148019 Length:850 Species:Mus musculus


Alignment Length:697 Identity:163/697 - (23%)
Similarity:233/697 - (33%) Gaps:241/697 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IHSTSLNKKLVKIKKFKLDDMK---EMVGG----------CCVCSDERGWPENPLVYCDGQNCTV 85
            |..|.:.|.:..:::...::|.   |.|.|          |.||........|.:|:||  .|.|
Mouse   190 IDETLMEKTIEVLERHCHENMNHAIETVEGLGIEYDEDVICDVCRSPDSEEGNDMVFCD--KCNV 252

  Fly    86 AVHQACYGIVTVPTGPWYCRKCESQERTSRV-----RCELCPSRDGALKKT-DNSGWAHVVCALY 144
            .||||||||:.:|.|.|.||.|        |     :|.|||.:.||:|.| ..:.||||.|||:
Mouse   253 CVHQACYGILKIPEGSWLCRSC--------VLGIYPQCVLCPKKGGAMKTTRTGTKWAHVSCALW 309

  Fly   145 IPEVRFGNVTTMEPII-LSLIPQERYSKTCYICQEIGKPNRANVGACMQCNKSNCKQQFHVTCAQ 208
            ||||.......|||:. :|.||..|::..|.:|       :...|||:||:..:|...||||||.
Mouse   310 IPEVSIACPERMEPVTKISHIPPSRWALVCNLC-------KLKTGACIQCSVKSCITAFHVTCAF 367

  Fly   209 SLGLLCEEAGNYLDNVKYCGYC---------------QHH------------------------- 233
            ..||..:...:..|.||:..:|               .||                         
Mouse   368 EHGLEMKTILDEGDEVKFKSFCLKHSQNKPKLGDAEYHHHRVAEQSQAKSEKTSLRAQKLRELEE 432

  Fly   234 ---------------------------YSKLKKGGNVKTIPPYKPIQHDTSSDSCSSPEKEIDST 271
                                       |.|||:..|..  .|..|.:.:..:......|:.|.:.
Mouse   433 EFYTLVQVEDVAKEMELSAFTVDFIYNYWKLKRKSNFN--KPLIPPKEEEENGLVQPKEESIHTR 495

  Fly   272 M---------------------------------------------NSATTSATII--------- 282
            |                                             |...|....:         
Mouse   496 MRMFMHLRQDLERVRNLCYMISRREKLKLSHTKVQEQIFGLQVQLINEEITEGLSLTNALENSLF 560

  Fly   283 ----KIT-------SSSGSAGGSSNVLNASSSAGISAGSSSGSGVSSSAKQ-------------- 322
                :||       |:|.....||    ..:...:|:..||..|.|..:.|              
Mouse   561 YPPPRITLKLKMPKSTSEDCKDSS----TETEHQLSSPGSSSPGHSKRSPQMPEEPLDMNVKIYP 621

  Fly   323 -----RKSNA--SSKSSSSSSSSSSSSTGGAPNPSSSSVHSGSASNMTGGGSVLPGSSNIGNISN 380
                 .|||.  :|:|.|...:.|||.|..|  ||:...|..|........:.|.|..:|||..|
Mouse   622 RYPLESKSNCLQTSRSHSRCETKSSSPTPRA--PSAEFYHGQSLGKPLALQAALHGQVSIGNGKN 684

  Fly   381 SLNNNLPGGSSSTSSAGNVPGGSGGIISASSGGATQSTSSQ----------SSTAPGTTKSSASS 435
            ..|:.:   |||....||           .||..||..:|.          ||..|.......||
Mouse   685 QPNSRV---SSSNGLEGN-----------WSGNITQKVNSSEVCYDQESMLSSHLPSPGNIRKSS 735

  Fly   436 SSSSSNSYKE------KHSKSL------SKSTSSKDK-DGKD---SSTNSANNNFTNS---SASS 481
            ....|.|:||      |.::.|      :|:.|||:: .|:.   ..|..|:...|:.   ....
Mouse   736 MEHFSRSFKEATNTWVKPTEDLQYCVKPTKNVSSKEQLWGRQLLRRPTGRASYQETDGYCPDLEP 800

  Fly   482 TSSNSSSTREKSSSKLSKNKDSNQVPSATSSLSTTSSINTQPSSSTS 528
            :.|.:.....|.:.::.:.....:.||..|:........|.|.|.:|
Mouse   801 SDSEAEGEGSKETPRVKRESSDRENPSHDSARECHGKTKTHPHSHSS 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlhNP_001262332.1 PHD_AF10_AF17 60..107 CDD:277049 23/56 (41%)
ePHD_AF10_like 118..233 CDD:277142 46/131 (35%)
Jade3XP_011245778.1 EPL1 <74..204 CDD:371106 3/13 (23%)
COG5141 165..>536 CDD:227470 89/364 (24%)
PHD_SF 282..392 CDD:389947 46/116 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1726
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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