DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Alh and Br140

DIOPT Version :9

Sequence 1:NP_001262332.1 Gene:Alh / 40850 FlyBaseID:FBgn0261238 Length:1717 Species:Drosophila melanogaster
Sequence 2:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster


Alignment Length:1208 Identity:268/1208 - (22%)
Similarity:402/1208 - (33%) Gaps:410/1208 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 CCVCSDERGWPENPLVYCDGQNCTVAVHQACYGIVTVPTGPWYCRKCESQERTSRVRCELCPSRD 125
            ||:|.|......|.:::||  .|.:||||.|||:..:|.|.|.||:| .|..:..|.|.|||:..
  Fly   286 CCICLDGECQNTNVILFCD--MCNLAVHQDCYGVPYIPEGQWLCRRC-LQSPSK
PVNCVLCPNAG 347

  Fly   126 GALKKTDNSGWAHVVCALYIPEVRFGNVTTMEPI-ILSLIPQERYSKTCYICQEIGKPNRANVGA 189
            ||.|:||:..||||||||:||||||.|...:||| .:..||..|:..|||:|:|.|      :||
  Fly   348 GAFKQTDHGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCKEKG------LGA 406

  Fly   190 CMQCNKSNCKQQFHVTCAQSLGLLCEEAGNYLDNVK-----------YCGYCQHHY---SKLKKG 240
            |:||::::|...|||||||..||...     :|.||           ...||..|.   :|||  
  Fly   407 CIQCHRNSCYAAFHVTCAQQAGLYMT-----MDTVKDGHNDSSMHVQKFAYCHAHTPADAKLK-- 464

  Fly   241 GNVKTIPPYKPIQHDTSSDSCSSPEKEIDSTMNSATTSATIIKITS------------------- 286
               ..:|.::..:|..         ||....:....::|.::.|.:                   
  Fly   465 ---MNVPDFEDTRHKM---------KEARKALAKKRSTAPVVLIPTIPPDRVQEIATMVTMQRKK 517

  Fly   287 ----------------SSG--------SAGGSSNVLNASSSAGISAGSSSGS------------- 314
                            .:|        |.|.:..|:..:   ||.....:|.             
  Fly   518 EFLDRIIAYWTLKRHYRNGVPLLRRLQSQGNNHGVIQRN---GIEGSPDTGELYRQLKYWQCLRQ 579

  Fly   315 -----------------------GVSSSAKQRKSN----ASSKSSSSSSSSSSSSTGGAPNPSSS 352
                                   .:|......:.|    |.:|...:..:..|......|     
  Fly   580 DLERARLLCELVRKREKLKVAFVRISEEVVMLQLNPLEAALNKLLDALEARDSMQIFREP----- 639

  Fly   353 SVHSGSASNMTGGGSVLPGSSNIGNIS--------NSL-----------NNNLPGGSSSTSSAGN 398
             |.:....:.|   .::....::|.:.        |||           .|.|...:..|     
  Fly   640 -VDTSEVPDYT---DIVKQPMDLGTMRAKLKECQYNSLEQLEADFDLMIQNCLAYNNKDT----- 695

  Fly   399 VPGGSG---------------------GIISAS------------------------SGGATQ-- 416
            |...:|                     |:::.|                        |.|..|  
  Fly   696 VFYRAGIRMRDQAAPLFVQVRKELQRDGLLARSQRYHVDHVEAEVEQELRLLLAAPASEGIVQKL 760

  Fly   417 ---STSSQSSTAPG-TTKS--------SASSSSSSSNSYKEKHSKSLSKSTSSKDKD--GKDSST 467
               :..||....|. .||.        |....|.....:..:||...::| .|.|:|  |...|.
  Fly   761 LILADKSQVLKNPTYRTKKIKQIRLEISRMRKSLQKARFAARHSSHANQS-QSDDEDTLGGSPSK 824

  Fly   468 NSANNNFTNSSASSTSSNSSSTREKSSSKLSKNKDSNQVPSATSSLSTTSSINTQPSSSTSTATA 532
            ......|.:|.......:.....|:.|.:.|..:|       |.|....:|..|.|.|...:...
  Fly   825 KRTRKRFNSSGVDMELGHDDDDEEEDSDEDSMGED-------TVSKDLLNSTQTPPCSPIKSLNN 882

  Fly   533 GSGGTGTH------VSSSAASGL----------------NSAPSTTNEHSNHAHTLSTNGTGAGS 575
            .|...|.:      ::..|.:.|                ||..|.|...|..:.:::|..|.|.|
  Fly   883 SSSPVGINRRTAILLTRKAQAALKRPSEPLTTPVKEEQHNSQSSNTQSTSGSSSSVTTAATAASS 947

  Fly   576 AAGKLQSVSNLSNSSSGFGSDLRSVSTSSSS---TVNDSTGGFGSNSNSERENLSGAGSSASNMP 637
            .||.|..|             |.|...::||   |.|:|:||                       
  Fly   948 GAGTLNHV-------------LSSAPPTASSFALTQNNSSGG----------------------- 976

  Fly   638 GTIAPGTG-GVSSSAATNLSTNKGGSSSSTANSLTSTSTSSGS--SSN---SSSKK----RKADS 692
            |.:|.||| |.||||.|           :.|.|||||:.:..|  |:|   .|.|:    |:...
  Fly   977 GALASGTGIGGSSSAGT-----------AAAASLTSTALAMNSKLSANLPVKSPKRPGRYRRVPE 1030

  Fly   693 AKSTSSISTSGSALEDNNSLISRYDIKDVQVALTPLTD---FEKEIEKSSKRQRTELSPPTHQTS 754
            .:.:||:|...|.    |..::      |..|| |:.:   ||: |..|.:..|.     .:|..
  Fly  1031 VRHSSSMSPKKSP----NPAVT------VSQAL-PMPETLPFER-IPDSFRVYRA-----NNQRD 1078

  Fly   755 ATAEVNAPLASSTSASIAVTASATAASAPPATGTTTLGSSISGNAGSTSSGNSSGVSATGGAQSA 819
            .:...:||..||:..|                  :....|:||:.....|..:|...|.|.....
  Fly  1079 VSDSDDAPSQSSSPCS------------------SCSDFSMSGSCSDFDSDEASEGDADGDPDRD 1125

  Fly   820 VGSGGYPKTESSKSSGTASAGSGSGSSSNTSSTKHGSNIKDISSSSNQQASTASSSSAPSLYVSV 884
            .|.....:.:|:...||..|.....:|.|.....:|:  ..|||||   ..:..|||........
  Fly  1126 GGRSRSEERDSTSQEGTTDAMDMQHASLNNVQGNNGN--MAISSSS---GGSGGSSSEDDELEER 1185

  Fly   885 PLSTANVPGINLPTSSTSSSTTSESHSASS--RSSGAQSQHQQQLSNALVGPPMGGSAGAFHGGT 947
            |||......:.:.|..|.:.||.....|.|  |..|.:..:..:.:::...||....||.....|
  Fly  1186 PLSARQNKPMKVGTRGTPTPTTMARAVALSAGRGRGKRRSNLSESTSSTATPPPLRRAGKLRSAT 1250

  Fly   948 TSAGSSSVIQQQSGKSSPALGTLVSGNSGGSIISASGFPLPSGNLTATTTESGNLKISYEKQTTR 1012
            .:|             ||.:..:.:..:                    ||.:|:           
  Fly  1251 PNA-------------SPLVNNIKARRN--------------------TTAAGS----------- 1271

  Fly  1013 VQQLQEQEAPPARRSRSRSGESGSSHHHAHAHHHHHHP 1050
                    ||....:||:..|..:|....:.|.|...|
  Fly  1272 --------APLTNNNRSKHSEDSASSERHNNHSHGQKP 1301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlhNP_001262332.1 PHD_AF10_AF17 60..107 CDD:277049 20/45 (44%)
ePHD_AF10_like 118..233 CDD:277142 56/126 (44%)
Br140NP_001286155.1 EPL1 <192..264 CDD:287484
PHD_BRPF 283..336 CDD:277047 22/52 (42%)
ePHD_BRPF 340..456 CDD:277140 56/126 (44%)
Bromo_brd1_like 615..712 CDD:99944 15/110 (14%)
BR140_related 1303..1414 CDD:99900
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464537
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D566217at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3222
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13793
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1726
SonicParanoid 00.000 Not matched by this tool.
65.980

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