DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mlp84B and ltd-1

DIOPT Version :9

Sequence 1:NP_001303418.1 Gene:Mlp84B / 40849 FlyBaseID:FBgn0014863 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_495697.2 Gene:ltd-1 / 174301 WormBaseID:WBGene00003089 Length:723 Species:Caenorhabditis elegans


Alignment Length:114 Identity:37/114 - (32%)
Similarity:49/114 - (42%) Gaps:21/114 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 CPRCGKSVYAAEE--RLAGGYVFHKNCFKCGMCNKSLD-STNCTE----HERELYCKTCHGRKFG 69
            |.||||.||..::  .|.....||:.||||.:|...|. .|.|..    :::|:||.. |....|
 Worm     7 CNRCGKQVYPTDKVGPLKDSTFFHQGCFKCYICGTRLALKTYCNNRNDINDKEVYCSN-HVPIAG 70

  Fly    70 PKGYGFGTGAGTLSMDNGSQFLRENGDVPSVRNG----ARLEPRAIARA 114
            |...       .::..|||....||.:  .|:||    |.|....||.|
 Worm    71 PHDL-------PMASTNGSGKNLENNN--HVKNGNWIDAGLSDMKIAHA 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mlp84BNP_001303418.1 LIM1_MLP84B_like 11..64 CDD:188788 21/58 (36%)
LIM_CRP_like 120..173 CDD:188712
LIM_CRP_like 222..275 CDD:188712
LIM_CRP_like 325..378 CDD:188712
LIM_CRP_like 421..474 CDD:188712
ltd-1NP_495697.2 LIM_Ltd-1 7..66 CDD:188827 21/59 (36%)
CYK3 <295..>484 CDD:227604
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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