DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1943 and jpt2

DIOPT Version :9

Sequence 1:NP_001262326.1 Gene:CG1943 / 40844 FlyBaseID:FBgn0037468 Length:118 Species:Drosophila melanogaster
Sequence 2:NP_955869.2 Gene:jpt2 / 321880 ZFINID:ZDB-GENE-030131-599 Length:218 Species:Danio rerio


Alignment Length:218 Identity:56/218 - (25%)
Similarity:78/218 - (35%) Gaps:100/218 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTSTELKIGLTTSARPSSRVLKPPGGGHTN----------------------------------- 30
            ||||.:..||..|.:.|||||:|||||.:|                                   
Zfish     1 MTSTNMFQGLEASGKSSSRVLRPPGGGSSNIFGGYEEDSSASRRPNKMSSSIFAPPEKQQESPKR 65

  Fly    31 ----------IFSEPDVAVPAPRAKYNQQNSSNL--------------------NACMG---STD 62
                      ||.:|:.|:|..:..::...|||:                    |..:|   :.|
Zfish    66 SNPPGGKSSGIFEKPEAALPQSKPVFSAAASSNIFGGAESTPPSLKSHPNKPKDNLSVGVPATPD 130

  Fly    63 PNKVVEK----IREEVSIQ---------KEEAKSA--------PPSQPKEPANK-PAATNGEAR- 104
            |...|.|    :.|||.:|         ||.|.:|        |.:|..|||.: |:..:.|.| 
Zfish   131 PPAPVAKPEPVVVEEVKVQPVAPQPTPEKEPAAAAAAPAPAPPPANQKAEPATRQPSEKDHEPRL 195

  Fly   105 -------GRV--PPGGFSSGGFW 118
                   .:|  ||||.||..|:
Zfish   196 APVPRSHNKVLNPPGGKSSVVFY 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1943NP_001262326.1 XRN_N <41..>92 CDD:251765 19/94 (20%)
jpt2NP_955869.2 JUPITER 14..>54 CDD:293659 11/39 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1620782at2759
OrthoFinder 1 1.000 - - FOG0007420
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR34930
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4211
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
55.070

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