DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sodh-1 and sord

DIOPT Version :9

Sequence 1:NP_001287203.1 Gene:Sodh-1 / 40836 FlyBaseID:FBgn0024289 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001165890.1 Gene:sord / 570613 ZFINID:ZDB-GENE-040426-1231 Length:354 Species:Danio rerio


Alignment Length:355 Identity:210/355 - (59%)
Similarity:267/355 - (75%) Gaps:2/355 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKDNLTAVLHGIEDMRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAHGRIGDFVLTKPMIIG 65
            |.||||:.|||...|:|||||||||...::|||.|.|||||||||||..:|||||||:.:|||:|
Zfish     1 MDKDNLSVVLHAKGDLRLEQRPIPEPGPNDVLLQMHSVGICGSDVHYWQNGRIGDFVVKQPMILG 65

  Fly    66 HESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCDHCKQGKYNLCPGMVFCATPPYDGNLTRYYK 130
            ||::|.|.|:|..||.||.|||||:|||||....:..|.|.|||.|.:.||||||.||||.||||
Zfish    66 HEASGRVVKVGSAVTHLKPGDRVAVEPGVPREVDEFVKSGHYNLSPSIFFCATPPDDGNLCRYYK 130

  Fly   131 HAADFCFKLPDHVTMEEGALLEPLSVGVHACKRAEVTLGSKVLILGAGPIGLVTLMAAQAMGASE 195
            |:|.||:||||:||.|||||:||||||:|||:||.|||||.|.:.||||||||:|:||:|||||:
Zfish   131 HSASFCYKLPDNVTYEEGALIEPLSVGIHACRRAGVTLGSSVFVCGAGPIGLVSLLAAKAMGASQ 195

  Fly   196 ILITDLVQQRLDVAKELGATHTLLLKRDQTAEETAVLVQKTMGGQPDKSIDCCGAESSARLAIFA 260
            ::|:||...||..|||:||...|.:|::.:.::.|..|:..:|..|...|:|.|.:||.:.||:|
Zfish   196 VIISDLSSDRLAKAKEIGADFLLPVKKEDSPQDLAKRVEGMLGCMPQICIECTGVQSSIQTAIYA 260

  Fly   261 TRSGGIVVVVGMGAAEIKLPLINALAREVDIRGVFRYCNDYAAALALVASGKVNVKRLVTHHFDI 325
            |||||:||.||:||....:||:||..|||||||||||||.:..|::::||.|||||.||||.|.:
Zfish   261 TRSGGVVVSVGLGAEMTTVPLLNAAVREVDIRGVFRYCNTWPVAISMLASKKVNVKPLVTHRFPL 325

  Fly   326 KETAKAFETSRKGLGGAIKVMIHVQPRDTN 355
            :...:||||:|:|||  :|||:.....|.|
Zfish   326 EHAVQAFETTRQGLG--VKVMLKCDKNDQN 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sodh-1NP_001287203.1 PLN02702 4..346 CDD:215378 204/341 (60%)
sorbitol_DH 8..349 CDD:176188 203/340 (60%)
sordNP_001165890.1 PLN02702 4..344 CDD:215378 204/341 (60%)
sorbitol_DH 7..347 CDD:176188 203/341 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578011
Domainoid 1 1.000 153 1.000 Domainoid score I4252
eggNOG 1 0.900 - - E1_COG1063
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56080
Inparanoid 1 1.050 423 1.000 Inparanoid score I1753
OMA 1 1.010 - - QHG56613
OrthoDB 1 1.010 - - D1019156at2759
OrthoFinder 1 1.000 - - FOG0001480
OrthoInspector 1 1.000 - - otm25520
orthoMCL 1 0.900 - - OOG6_100349
Panther 1 1.100 - - O PTHR43161
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X751
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.770

Return to query results.
Submit another query.